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Submitted SNP(ss) Details: ss12992566           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1022705
RefSNP(rs#)rs9424286
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize16
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-14e10.q1cposition:263quality:35sequence:1bB531C17-4b03.q1cposition:-104quality:39sequence:1bB531C17-17d05.q1cposition:209quality:43sequence:1bB531C17-16h02.q1cposition:283quality:29sequence:1bB531C17-18a01.p1cposition:-174quality:39sequence:1bB531C17-11h09.p1cposition:214quality:40sequence:1bB531C17-10e12.q1cposition:256quality:43sequence:1bB531C17-22g04.q1cposition:104quality:37sequence:1bB15E13-1m16.q1kposition:184quality:56sequence:1bB531C17-22e12.p1cposition:-148quality:35sequence:1bB531C17-17c05.q1cposition:201quality:43sequence:1bB531C17-23e10.p1cposition:223quality:46sequence:1bB15E13-1f18.q1kposition:-394quality:51sequence:1bB531C17-9d12.p1cposition:188quality:51sequence:1bB531C17-3h11.p1cposition:51quality:29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992566|allelePos=1888|len=3888|taxid=9606|alleles='G/T'|mol=Genomic
 TTTTGGAATT CCTGCACTTT TGAGTGGTGT AAACCAAAAC CAAAAttctt ttttttttct
 tgagacggag tctcgctctg tcacccaggc tggagtgcag tgatgctatc ttggttcact
 gcaacctccg cctcctgggt tcaagcaatt ctcctgcctc agcctcccgc tggaactaca
 ggtgcatgcc accgtggccg gttaattttt atattaaccg tgttaatata atttttatat
 taaccggttt tcgccatgtt ggccaggctg gtctcgaaca cctgacctca ggtgatctgc
 tcgcctcagc cccccaaagt gctgggctca caggcacaag ccaccgcacc cagccCCCAA
 ATTCttattt atttatttat ttatttattg agacagagtc ttgctctgtt acccaggctg
 gagtgcagtg gttccagctc ggctcattgc agcctcaact tccctggctc cagtgatcct
 cccacctcag cccctgagta gctggtacca caggcatgtg ccaccacgcc tggctaattt
 ttgtattttt tgtagagctg gggttttgcc atgttgccta ggctggtctc aaacccatga
 actcaagcaa tccacctgcc tcaacctccc aaattgctag gattacaggt gtgagtcacc
 aaacctggcc Aaaaaataaa attctagagg ctgggcacgg tggctcatgc ctgtaatccc
 agcactttgg aaggccgagg cgggcggatc accaggtcag gagatcgaga ccatcctggt
 gaacacggtg aaaccccgtc tctactaaaa atacaaaaaa aattagccgg gcttggtggc
 aggcgcctgt agtcccagct actcgggagg ctgaggcagg agaatggcaa gaacccagag
 ggcggagctt gcagtgagcg gagattgcgc cactgcactc cagcctgggc gacagagtga
 gactccgtct caaaataaat aaataaaaat aaaataaaat tctaagcccc ccaaccatct
 gagtggaccc ctcctctggg ccaagggcat tccctagtta atctgaaaaa ctagttcagg
 ccatgatggg aagggtcgga tgtggagggg taggggttgg acatgcctca ttatattctc
 ctccctttgg gaattcaggc ccacctgacc atcattaata tcaacacaga ctttaagact
 gacaaagcca ggccaggtgt ggtggctcat ggctgtaatc ccagcacttt gagaggccat
 ggcgggtgga tcacttgagg tcaggagttt gagaccagcc tgaccaacat ggtgaaaacc
 catccctact aaaaatacaa aaattagctg ggcatggtgg cgggcgcctg taatccaagc
 tactcgggag gctgaggcag gagaattgct taaacctagg aggcggaggt tgcagtgagc
 caagattgca ccactgcatt ccagcctggg tgacagagcg agactccatc tcaaaataac
 aacaacaata aaagactgac aaagctgact ctttgtagca atgataccaa attctagcct
 gtttctagta gagcattatg tgactgatca aggccctgaa ggaaattgaa gtattttacc
 ccaaattata tttccttgct gtatcttaaa acaatcctgc aaggctgcct attgtggggg
 aaatccacat tctgaagata gtatccttgc tttgctaggc ctttttcctg atccaggaga
 gaatcaactC TGATAATAAA TAAATAAACA AAGAAAAAAA CAAAAACCAT TTACAggccg
 ggcgcggtgg ctcactcctg taatcccaac actttgggag gctgaggcag gcggatcacc
 tgaggtcagg agttcaagac cagcctg
 K
 ccaacatggt gaaaccccgt cttaactaaa aatacaaaaa ttagccaggt ggggtggtgg
 gcgcccgtga tcccagctac ttggaggcta gggcaggagc ttcaacccag gaggcagaag
 ttgcactgag ctgaaattgc accattacac tccagcctgg gcaacagagg gaggctccat
 ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaAAAagaa cttccagggg ctaattttga
 aggaaaccag gctcagagac ccagatgtgg atcctactgc tctggggcag ttaggaagag
 tgagcccacc actactgggc caaagtcagg atgatgcaag ctggaccttc agacagggtg
 ttactcgaga tcaccttcgg aacaagacat gcagccctgc acccccctgc acccccttgc
 acccttctgc atcctcctgc accaccccca catgtttccc acaccaagtt ttccttccaa
 aacctctcac tcagcccaga agacagaggg tctcttggag gcatgagccc agccatgtcc
 catcggctgg catttgttta ataaacggct ttccttccac cacacctcgc ttctcatgtt
 tttggtcttt gagcagccac gcttgagctg gttgcaGatc tggtgccttg tgtgaggcac
 tgtgttgtga gtggctcagc ctgtgtacct ggtttccaat gaaggcagag attggccaca
 gcagtcccag gatttaccca ctcttgctgt caggcaggac agcagctgct tgaaaatgcc
 agctgctcat ggccagctga ccccaaggct aggaccttag ggaattccta gtggctgccg
 agactgcctt tgtcttgggg attttccctt ccctctcctt catgacatca gcatctctca
 tgctctgctg gtgggaggga agcagtatgt gggatgtgaa ctgaagtgca cctggaaatc
 ctctgcatct gccatctggg gctctagctg tctagagcta gtattggtag tctgtggtgc
 cacctgggtc tctgtgccat ctggacctaa cgcaggtaac tctgtggtgc cgcctgggtc
 tctgtgccat ctcgacctaa cgcaggtcgc tctgtggtgc cgcctgggtc tctgtgccat
 ctggacctaa cacaggtcac tctgtggtgc cgcctgggtc tctgtgccat ctggacctaa
 cgcaggtcac tctgtggtgc tgcctgggtc tctgtgccat ctggacctaa cgcaggtcac
 tccatggtgc tgtctgggtc tgggacagga cctcaggact ttgctccaat ctcccctctg
 tttggaggga tctgtttgga gggctgtgtc tacattggat ctatttgtgt ttgtgtctct
 gtttagtgtt gcacccccct ctgagggtgc ttaggcacag tctgcatccc aatggccaag
 actaggtcca tctggttgtc agaaagtagc aagataggct gcccctctcc tcactaggtg
 tatttgtaca ttttcacact gctgataaaa acatacctga gactaagaag aaaaagaggt
 ttaattgggc ttacagttcc acatggctgg ggaggcctca gaatcatgac gggaggtgaa
 aggcacttct tacaaggcgg tggcaagaga aaatgaagaa gatgcaaaag cagaaacccc
 tgataaaacc atcagatctc atgagactta ttcactacct tgagaacggt gtgggggaaa
 ctgcccccat gattcaaatt acctcccacc ttctccctcc cacaacctgt gggaattatg
 ggagtacaat tcaagatgag atttgTGCTG TTATGACCGT CCTTGAAGAT TTCCCTGAAC
 CAGTTAACAT TGTCTCTGAT TCAGCGTAGG TACTACATGT TGCTCACAAC AATTGAAACT
 GCCTTAATCC AATTTCTGCC TGATGATGAC CTATTCTTTC TTTTTCAAAG GTTTCAGTCT
 GTGCCCAGAG CAAGGTCTTC

  Submitted Frequency for ss12992566 back to top
There is no frequency submission for ss12992566.


  dbSNP summary of Genotypes for ss12992566 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992566.


  Submitted individual genotype for ss12992566 back to top
There is no individual genotype data for ss12992566.