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Submitted SNP(ss) Details: ss12992567           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1029516
RefSNP(rs#)rs7416185
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize14
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-14a04.q1cposition:217quality:41sequence:1bB531C17-18d06.q1cposition:145quality:40sequence:1bB531C17-16f09.p1cposition:-324quality:35sequence:1bB15E13-2e06.p1kposition:-288quality:56sequence:1bB15E13-2e11.p1kposition:552quality:40sequence:1bB531C17-18h08.q1cposition:-212quality:43sequence:1bB15E13-3k02.q1kposition:-258quality:45sequence:1bB15E13-2h06.p1kposition:55quality:35sequence:1bA128M10-5b12.q1kposition:-277quality:51sequence:1bB531C17-13b11.q1cposition:464quality:33sequence:1bB15E13-1c04.p1kposition:-370quality:56sequence:1bB531C17-25d02.q1cposition:249quality:43sequence:1bB531C17-9a04.q1cposition:144quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992567|allelePos=650|len=2650|taxid=9606|alleles='T/C'|mol=Genomic
 GGAGTCGGAT TAGTAGGAAA GGAACCAGGT TTCAAGGGAG CCTGTGACTC TAACCGAGTC
 TGATTAGGAG GAAAGGAAAC AGGCATGAGA AAACCAGGCT Atggagggat agggttgagg
 gcctcattac cgggcggaac aggcagaagg ttgagacccc tacagcaggg ctgaacaggg
 acagggttga gataaaacag gagggttttt ataaagctta aataagctga gtacttagta
 ctggcttgtc ccatggtgtc cccggaatac tctgagtgct ctagcttacc accaagctta
 ctgaccacaa tcctcaggaa tctctggtca aaatcctctg ctgaatccca cactcagggt
 gcaacttcac acagcgagag agagccccac gttggagcgc cggatgtagg gaccagcccc
 acagtgttgg tgcgttctgc tccccatgtg cggagatgag agattgtaga aataaagaca
 caagacaaag agataaaaag aaaagacagc tgggcctggg ggaccaccac caccaagacg
 cggagaccgg tagtggcccc gaatgcctgg ctgcactgtt atttattgga tacaaaccaa
 aagggacagg gtaaagagtg tgagtcatct ccaatgatag gtaaggtca
 Y
 gtgggtcaca tgtccactgg acagggggcc ctttcctgcc tggcagccga ggcagagaga
 gagggggaga gagagagaga gacagcttac gccattattt ctgcttatca tagactttta
 gtactttcac taatttgcta ctgttatcta aaaggcaaag ccaggtgtgc aggatggaac
 atgaaggcgg actaggagcg tgaccactga agcacagcat cacagggaga cggttaggcc
 tccggataac tgcgggcgag cctaactgat gtcaggccct ccacaagagg tggaggagca
 gagtcttctc taaactcccc cagggaaagg gagactccta agtagcaggt gtttttcctt
 gacactgatg ctactgctag accacggtct gcctggcaac gggcatcttc ccagacgctg
 gtgttaccgc tagaccaagg agccctctgg tgaccctgtc tgggcataac agaaggctcg
 cactatcgtc ttctggtcac ttctcaccat gtcccctcag cccccatctc tgtatggcct
 ggtttttcct aggttatgat tatagagcaa ggattattat aatattggaa taaagagcaa
 ttgctacaaa ctaatgatta atgatattca tatataatca tgtctgtgat ctagatctag
 tataactctt gttgttttat atattttatt atactggaat agctcgtgcc cttggtctct
 tgtctcggca cctggatggc ttgctgccca cagatgtctg ggtcatttcc aattcagaaa
 agactgtgct atgggaaaat gtgtttctaa aaattatgga attgtttcat ttacaaaata
 acatctgata gttcaagatt tcttgcttcc tgggttttca ctaaaattta aggttactaa
 gaataggaat tctaattaat atataattct gtaaatTGTG ttattgagag aaaaaataat
 tttatgtaat ttgaaagttg tttaaaagtt atttatgaag aaagataaaa agaaactaat
 aggtagggga gagagtaata aaacaagttt tggctatgaa gatgtatttt tggtaaggat
 atgaagaaaa taaaataatt ttatataaga aaggatatta tgtggtaaat tcttatccta
 aagtaaaatg actagaaaag agagaagtat cagacacgtc agaaagtcca aacatgttgt
 agatggtcag tgtaggttgt gataaggttt gtaaagggca attACCTGAG ACTGGGTAAT
 TTATTtttat ttatttattt atttatttat ttattttttg agacagagtc tcgctctgtc
 gcccaggctg gagtgcagtg gcgcgatctc ggctcactgc aagctccacc tcctgggttc
 atgccattct cctgcctcag cctcctgagt agctgggact acaggtgcct gccaccatgc
 ccggataatt tttttttttt tttttgtatt tttagtagaa atcgggtttc accgtgttag
 ccaggatggt ctcgatctcc tgaccttgtg atcagcccgc ctcagcctcc caaagtgctg
 ggattacagg tgtgagccac tgtgcctggc tgagactggg taatttataa agaggtttga
 ttggctcaac gttctacagg ctgtggagga agtatggcca tgagcatctt cttggggagg
 catcagggag cttttactca gggcggaggc gaagcaggag ctagagagtg agggggaggt
 gccacacact ttcaaacaag cagataactc tctgttatca ggacaggacc aagcggatgg
 tgctaacctc ttcatgagaa atccgccccc atgatccagt cacctactac caggcccctc
 ctccaacact gaggattaca tttcattatg agatgtgggc agggacacag atccaaacca
 tatcaAActc accactgcac tccagcctgg gtggcagagc ccagcagact ccCAGAGTTG
 AGGAGACAGC TGAGAAGCCA

  Submitted Frequency for ss12992567 back to top
There is no frequency submission for ss12992567.


  dbSNP summary of Genotypes for ss12992567 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992567.


  Submitted individual genotype for ss12992567 back to top
There is no individual genotype data for ss12992567.