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Submitted SNP(ss) Details: ss12992568           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1031362
RefSNP(rs#)rs7527199
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-16c01.p1cposition:55quality:33sequence:1bB15E13-1p13.q1kposition:120quality:45sequence:1bB531C17-13c03.q1cposition:142quality:35sequence:1bB15E13-3f16.p1kposition:-369quality:56sequence:1bB531C17-24g11.p1cposition:156quality:44sequence:1bB15E13-3h13.p1kposition:-476quality:40sequence:1bB531C17-20h09.q1cposition:-317quality:40sequence:1bB531C17-2g06.p1cposition:-190quality:28sequence:1bB15E13-3p12.q1kposition:204quality:51sequence:1bB15E13-3f04.p1kposition:-405quality:42sequence:1bB15E13-2g08.p1kposition:-114quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992568|allelePos=2000|len=2225|taxid=9606|alleles='A/C'|mol=Genomic
 aaagaaaaga cagctgggcc tgggggacca ccaccaccaa gacgcggaga ccggtagtgg
 ccccgaatgc ctggctgcac tgttatttat tggatacaaa ccaaaaggga cagggtaaag
 agtgtgagtc atctccaatg ataggtaagg tcatgtgggt cacatgtcca ctggacaggg
 ggccctttcc tgcctggcag ccgaggcaga gagagagggg gagagagaga gagagacagc
 ttacgccatt atttctgctt atcatagact tttagtactt tcactaattt gctactgtta
 tctaaaaggc aaagccaggt gtgcaggatg gaacatgaag gcggactagg agcgtgacca
 ctgaagcaca gcatcacagg gagacggtta ggcctccgga taactgcggg cgagcctaac
 tgatgtcagg ccctccacaa gaggtggagg agcagagtct tctctaaact cccccaggga
 aagggagact cctaagtagc aggtgttttt ccttgacact gatgctactg ctagaccacg
 gtctgcctgg caacgggcat cttcccagac gctggtgtta ccgctagacc aaggagccct
 ctggtgaccc tgtctgggca taacagaagg ctcgcactat cgtcttctgg tcacttctca
 ccatgtcccc tcagccccca tctctgtatg gcctggtttt tcctaggtta tgattataga
 gcaaggatta ttataatatt ggaataaaga gcaattgcta caaactaatg attaatgata
 ttcatatata atcatgtctg tgatctagat ctagtataac tcttgttgtt ttatatattt
 tattatactg gaatagctcg tgcccttggt ctcttgtctc ggcacctgga tggcttgctg
 cccacagatg tctgggtcat ttccaattca gaaaagactg tgctatggga aaatgtgttt
 ctaaaaatta tggaattgtt tcatttacaa aataacatct gatagttcaa gatttcttgc
 ttcctgggtt ttcactaaaa tttaaggtta ctaagaatag gaattctaat taatatataa
 ttctgtaaat TGTGttattg agagaaaaaa taattttatg taatttgaaa gttgtttaaa
 agttatttat gaagaaagat aaaaagaaac taataggtag gggagagagt aataaaacaa
 gttttggcta tgaagatgta tttttggtaa ggatatgaag aaaataaaat aattttatat
 aagaaaggat attatgtggt aaattcttat cctaaagtaa aatgactaga aaagagagaa
 gtatcagaca cgtcagaaag tccaaacatg ttgtagatgg tcagtgtagg ttgtgataag
 gtttgtaaag ggcaattACC TGAGACTGGG TAATTTATTt ttatttattt atttatttat
 ttatttattt tttgagacag agtctcgctc tgtcgcccag gctggagtgc agtggcgcga
 tctcggctca ctgcaagctc cacctcctgg gttcatgcca ttctcctgcc tcagcctcct
 gagtagctgg gactacaggt gcctgccacc atgcccggat aatttttttt tttttttttg
 tatttttagt agaaatcggg tttcaccgtg ttagccagga tggtctcgat ctcctgacct
 tgtgatcagc ccgcctcagc ctcccaaagt gctgggatta caggtgtgag ccactgtgcc
 tggctgagac tgggtaattt ataaagaggt ttgattggct caacgttcta caggctgtgg
 aggaagtatg gccatgagca tcttcttggg gaggcatcag ggagctttta ctcagggcgg
 aggcgaagca ggagctagag agtgaggggg aggtgccaca cactttcaaa caagcagata
 actctctgtt atcaggacag gaccaagcgg atggtgctaa cctcttcatg agaaatccgc
 ccccatgatc cagtcacct
 M
 ctaccaggcc cctcctccaa cactgaggat tacatttcat tatgagatgt gggcagggac
 acagatccaa accatatcaA Actcaccact gcactccagc ctgggtggca gagcccagca
 gactccCAGA GTTGAGGAGA CAGCTGAGAA GCCAAGGTCA GGGTGGCTAG GGTCAGGGGA
 CAGGGCACCC TTAGCTTGAG CACCTCCACT GAGCACCAGC CACTC

  Submitted Frequency for ss12992568 back to top
There is no frequency submission for ss12992568.


  dbSNP summary of Genotypes for ss12992568 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992568.


  Submitted individual genotype for ss12992568 back to top
There is no individual genotype data for ss12992568.