| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1031362 | | RefSNP(rs#) | rs7527199 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 12 | | Population | N.D. |
| | Allele | | Observed Allele | A/C | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence:1bB531C17-16c01.p1cposition:55quality:33sequence:1bB15E13-1p13.q1kposition:120quality:45sequence:1bB531C17-13c03.q1cposition:142quality:35sequence:1bB15E13-3f16.p1kposition:-369quality:56sequence:1bB531C17-24g11.p1cposition:156quality:44sequence:1bB15E13-3h13.p1kposition:-476quality:40sequence:1bB531C17-20h09.q1cposition:-317quality:40sequence:1bB531C17-2g06.p1cposition:-190quality:28sequence:1bB15E13-3p12.q1kposition:204quality:51sequence:1bB15E13-3f04.p1kposition:-405quality:42sequence:1bB15E13-2g08.p1kposition:-114quality:51 |
>gnl|dbSNP|ss12992568|allelePos=2000|len=2225|taxid=9606|alleles='A/C'|mol=Genomic aaagaaaaga cagctgggcc tgggggacca ccaccaccaa gacgcggaga ccggtagtgg
ccccgaatgc ctggctgcac tgttatttat tggatacaaa ccaaaaggga cagggtaaag
agtgtgagtc atctccaatg ataggtaagg tcatgtgggt cacatgtcca ctggacaggg
ggccctttcc tgcctggcag ccgaggcaga gagagagggg gagagagaga gagagacagc
ttacgccatt atttctgctt atcatagact tttagtactt tcactaattt gctactgtta
tctaaaaggc aaagccaggt gtgcaggatg gaacatgaag gcggactagg agcgtgacca
ctgaagcaca gcatcacagg gagacggtta ggcctccgga taactgcggg cgagcctaac
tgatgtcagg ccctccacaa gaggtggagg agcagagtct tctctaaact cccccaggga
aagggagact cctaagtagc aggtgttttt ccttgacact gatgctactg ctagaccacg
gtctgcctgg caacgggcat cttcccagac gctggtgtta ccgctagacc aaggagccct
ctggtgaccc tgtctgggca taacagaagg ctcgcactat cgtcttctgg tcacttctca
ccatgtcccc tcagccccca tctctgtatg gcctggtttt tcctaggtta tgattataga
gcaaggatta ttataatatt ggaataaaga gcaattgcta caaactaatg attaatgata
ttcatatata atcatgtctg tgatctagat ctagtataac tcttgttgtt ttatatattt
tattatactg gaatagctcg tgcccttggt ctcttgtctc ggcacctgga tggcttgctg
cccacagatg tctgggtcat ttccaattca gaaaagactg tgctatggga aaatgtgttt
ctaaaaatta tggaattgtt tcatttacaa aataacatct gatagttcaa gatttcttgc
ttcctgggtt ttcactaaaa tttaaggtta ctaagaatag gaattctaat taatatataa
ttctgtaaat TGTGttattg agagaaaaaa taattttatg taatttgaaa gttgtttaaa
agttatttat gaagaaagat aaaaagaaac taataggtag gggagagagt aataaaacaa
gttttggcta tgaagatgta tttttggtaa ggatatgaag aaaataaaat aattttatat
aagaaaggat attatgtggt aaattcttat cctaaagtaa aatgactaga aaagagagaa
gtatcagaca cgtcagaaag tccaaacatg ttgtagatgg tcagtgtagg ttgtgataag
gtttgtaaag ggcaattACC TGAGACTGGG TAATTTATTt ttatttattt atttatttat
ttatttattt tttgagacag agtctcgctc tgtcgcccag gctggagtgc agtggcgcga
tctcggctca ctgcaagctc cacctcctgg gttcatgcca ttctcctgcc tcagcctcct
gagtagctgg gactacaggt gcctgccacc atgcccggat aatttttttt tttttttttg
tatttttagt agaaatcggg tttcaccgtg ttagccagga tggtctcgat ctcctgacct
tgtgatcagc ccgcctcagc ctcccaaagt gctgggatta caggtgtgag ccactgtgcc
tggctgagac tgggtaattt ataaagaggt ttgattggct caacgttcta caggctgtgg
aggaagtatg gccatgagca tcttcttggg gaggcatcag ggagctttta ctcagggcgg
aggcgaagca ggagctagag agtgaggggg aggtgccaca cactttcaaa caagcagata
actctctgtt atcaggacag gaccaagcgg atggtgctaa cctcttcatg agaaatccgc
ccccatgatc cagtcacct
M
ctaccaggcc cctcctccaa cactgaggat tacatttcat tatgagatgt gggcagggac
acagatccaa accatatcaA Actcaccact gcactccagc ctgggtggca gagcccagca
gactccCAGA GTTGAGGAGA CAGCTGAGAA GCCAAGGTCA GGGTGGCTAG GGTCAGGGGA
CAGGGCACCC TTAGCTTGAG CACCTCCACT GAGCACCAGC CACTC
There is no frequency submission for ss12992568.
No sufficient data to compute Hardy-weinberg probability for ss12992568.
There is no individual genotype data for ss12992568.
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