| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1032216 | | RefSNP(rs#) | rs7530315 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 10 | | Population | N.D. |
| | Allele | | Observed Allele | A/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
|
| Comment | | sequence:1bB15E13-1c04.q1kposition:490quality:28sequence:1bB15E13-1c18.q1kposition:-265quality:51sequence:1bB531C17-9h01.q1cposition:-166quality:38sequence:1bB531C17-17c03.q1cposition:302quality:35sequence:1bB15E13-3e12.q1kposition:-149quality:44sequence:1bB531C17-8f02.p1cposition:-87quality:32sequence:1bB531C17-17d03.q1cposition:299quality:26sequence:1bB15E13-1c02.q1kposition:-286quality:41sequence:1bB15E13-2n07.p1kposition:160quality:29 |
>gnl|dbSNP|ss12992569|allelePos=666|len=2137|taxid=9606|alleles='A/T'|mol=Genomic CCTTAGCTTG AGCACCTCCA CTGAGCACCA GCCACTCTCT TCTTATGGGG CAACTCCCAG
CACTGGACAC tttttttttt ttgagatgga gtctcactct gtcatccagg ctggagtgta
gtggcgcaat cctggctcgt tgcaacctcc acctcctggg ttcaagcaat tctcctgcct
cagcctccaa ctagctggga ttactgacac ctgccaccac acctgactga tttttgtatt
tttactagag acaggggttc accatgttgc ctaggctggt ctcgaactcc tgaccgcaag
taatctgcct gccttggcct cccaaagtgc tgggattaca ggtgtgagcc accatgcctg
gccACTGGAT GCATTTTAGA CAGGACCACT CAGGgggtgt agtagctcac acctgtaatc
ccagcacttt gggaggctga ggtgggagga tcagttgagc tcaggagttc cagaccagcc
tgggcaacat agtgagattc ccctgtacaa aaatgtaaaa attagctggg tgtggtggca
tgtgcctgta gttccagcta ctgaggaggc tgaggcagga ggatcagttg agcccaggag
gttgaaggtt gcaaccagct gagatcacac cactgcactg cagtctggat gacagagcaa
gaccc
W
atctcaaaca ataataaaca aaGAGGATCA GGtgtcttag tctgcttgtt ataacaaaat
acctgagaca gggtaattta tagaaagcag aggtttcttt ctaacagccg tggaggctgg
gagtccaagc atcctctgga gggagagagg gaaggcaggc tgtgtcctca cagggtggaa
ggtggagggg gatcccacac ccaagacccc ccacccactt ttttttttga gatggagttt
cactcttgtt gcccaggctg gagtgcaatg gcacgatcgc ggctcaccgc aacctccacc
tcccgggttc aagtgattct cctgcctcag cctcccaagt agctgagatt acaggcatgt
gccaccacgc ctggctaatt ttgtattttt agtagagacg gggtttctcc atgttggtca
ggctagtctc gaactcccga cctcaggtga tctgcctgcc ttggcctcgc aaagtgctgg
gattacaggc atgagccact gcgcccggcc cacttttttt ttttgagaca gggtctcact
ctgtcaccca ggctgagtgc actggcatga tcatggctca cttcagcctt gacctccagg
gctcatgtga tcctcctgcc tctgctaccc aaataggtgg cactacaggc acatgccacc
atgcccagct aattttatat tttttgtaga gatggggtct ctctttgttg cccaggttgg
tcttgaactc ctggacgccg gtgatcctct catctcggtc tcccaaaggc tgggtttata
ggtgtgagcc actgtgtctg gccccaagtc cttttattgt tgcacaaatc caaccatgag
ggcagggcct atggtcaggc cccacctgtc tatactgttg caccgggcag tgagtttcca
gcctgtgaat ttgtggggca cattcaCCTC CCAGCACCAG GAAACAGAAT GCTGCCTGAC
GCTGCTACCT AGAGTAACAC AGtgttgcac gctgaaagag tgagggtcat gatcaactca
gtataccact ggaggcgacg tgagtaaaca gcaaactgtt tctcatacat gcagaatgtt
ggcaaacaaa ctgcgtctgc cacctagaag gaatgctgag ggcagtcacg cctcaagcac
agtgtttctt gtgattaggt acatctgaag cctgttagta acaatatgaa cctgtgatca
attaagcagc tgaccgatcg ttacctcctc ctccctcctc ctgctaccca ataaatagga
agggctgtgg aagctcgggc ggtgcctttg ctcactagaa gcagggagct ctcttcttct
tccccgtgtt acccttccgt taaaatagtt acttttgttt taagttttca tttctatgtt
tgtccctctt ccttcagtct cataatgatg gtctcaagta gtaacagcag tctgccacaA
CACAGGAGGT GTGAAATCCA CATTACAGAG G
There is no frequency submission for ss12992569.
No sufficient data to compute Hardy-weinberg probability for ss12992569.
There is no individual genotype data for ss12992569.
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