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Submitted SNP(ss) Details: ss12992570           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1039226
RefSNP(rs#)rs4648410
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize9
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-4g12.q1cposition:358quality:35sequence:1bB15E13-2i07.q1kposition:252quality:56sequence:1bB15E13-2p04.p1kposition:398quality:45sequence:1bB531C17-2c11.q1cposition:-257quality:43sequence:1bB15E13-2o21.p1kposition:-564quality:42sequence:1bB531C17-15c12.p1cposition:-242quality:51sequence:1bB15E13-1o14.q1kposition:643quality:46sequence:1bB15E13-2e09.p1kposition:192quality:30

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992570|allelePos=300|len=500|taxid=9606|alleles='C/G'|mol=Genomic
 CACAGACACC CAGCAACAAC GTCCCAGGCC CATGCTGATG GCCGTCACCC GACTACAGGA
 GCCAGGGCTG AGCCTAGTAG GGTCTACTCT TCAGCTTCCT Attttttttt tttttgttga
 gacagagtct cactctgtca cccaggctgg agggcagtgg cgcaatattg gctcaccaca
 acctccacct cccgggttca agcaattctc ctgcttcagc ctcctgagta gctggactat
 aggtgccggc cactgtgccc ggccaatttt ttatagggtt tcaccatgtt ggccaggct
 S
 atctcgaact cctgacctca agtgatctgc ctgccttagc ccccaaagtg ctgggattat
 aggcgtgagc cactgtgcct ggccAGCTTC CTGATTCTAA ACACTTGAGT CAGTGATGTA
 GAAAGAGCGG AGGACGGGAG TGTGAATCCT AGGCCACCCG TGGAGCCTTC GCACTGCACA
 GCCAGTTTGC AGGTGGAGAA

  Submitted Frequency for ss12992570 back to top
There is no frequency submission for ss12992570.


  dbSNP summary of Genotypes for ss12992570 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992570.


  Submitted individual genotype for ss12992570 back to top
There is no individual genotype data for ss12992570.