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Submitted SNP(ss) Details: ss12992571           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1039413
RefSNP(rs#)rs6702916
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-3b02.q1cposition:353quality:56sequence:1bB15E13-2p04.p1kposition:211quality:51sequence:1bB531C17-5b07.p1cposition:520quality:40sequence:1bB15E13-1o14.q1kposition:456quality:56sequence:1bB15E13-2m13.q1kposition:641quality:56sequence:1bB531C17-20h04.p1cposition:-232quality:48sequence:1bB531C17-2c11.q1cposition:-444quality:39sequence:1bB15E13-2i07.q1kposition:65quality:40sequence:1bB531C17-4g12.q1cposition:171quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992571|allelePos=201|len=401|taxid=9606|alleles='T/A'|mol=Genomic
 tgttggccag gctcatctcg aactcctgac ctcaagtgat ctgcctgcct tagcccccaa
 agtgctggga ttataggcgt gagccactgt gcctggcCAG CTTCCTGATT CTAAACACTT
 GAGTCAGTGA TGTAGAAAGA GCGGAGGACG GGAGTGTGAA TCCTAGGCCA CCCGTGGAGC
 CTTCGCACTG CACAGCCAGT
 W
 TGCAGGTGGA GAAGGATTTT GGTCACACGA TTCTGATTAT TAGCCTGCTT ACTAAGGAAC
 CAGAACATGA AGACAGGCTT GGATGCTTTA TTTTGCTTTT AAAGGGATGG GGTCTTGCCA
 TGTTGCCCTG GACGGGGATG CTTTTTTGAA TAAGTCAAAA TGGAGGGATG CAGACTACAC
 CTGCTCAGCG GCGCTGTCCC

  Submitted Frequency for ss12992571 back to top
There is no frequency submission for ss12992571.


  dbSNP summary of Genotypes for ss12992571 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992571.


  Submitted individual genotype for ss12992571 back to top
There is no individual genotype data for ss12992571.