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Submitted SNP(ss) Details: ss12992572           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1039481
RefSNP(rs#)rs6702935
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-5b07.p1cposition:452quality:40sequence:1bB531C17-3b02.q1cposition:285quality:51sequence:1bB15E13-1o14.q1kposition:388quality:56sequence:1bB531C17-2e05.p1cposition:393quality:34sequence:1bB15E13-1e02.q1kposition:560quality:27sequence:1bB531C17-20h04.p1cposition:-300quality:37sequence:1bB531C17-4g12.q1cposition:103quality:48sequence:1bB531C17-20d04.p1cposition:509quality:40sequence:1bB15E13-2m13.q1kposition:573quality:42sequence:1bB15E13-2o21.q1kposition:679quality:40sequence:1bB531C17-24e05.q1cposition:502quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992572|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 GATTATAGGC GTGAGCCACT GTGCCTGGCC AGCTTCCTGA TTCTAAACAC TTGAGTCAGT
 GATGTAGAAA GAGCGGAGGA CGGGAGTGTG AATCCTAGGC CACCCGTGGA GCCTTCGCAC
 TGCACAGCCA GTTTGCAGGT GGAGAAGGAT TTTGGTCACA CGATTCTGAT TATTAGCCTG
 CTTACTAAGG AACCAGAACA
 Y
 GAAGACAGGC TTGGATGCTT TATTTTGCTT TTAAAGGGAT GGGGTCTTGC CATGTTGCCC
 TGGACGGGGA TGCTTTTTTG AATAAGTCAA AATGGAGGGA TGCAGACTAC ACCTGCTCAG
 CGGCGCTGTC CCTCACCTGG CTGCAGTGCC GGGGCCTTCT GCAGAATGTG TGTCTTGCGC
 AGGTTCATCG TGCAGCCGGC

  Submitted Frequency for ss12992572 back to top
There is no frequency submission for ss12992572.


  dbSNP summary of Genotypes for ss12992572 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992572.


  Submitted individual genotype for ss12992572 back to top
There is no individual genotype data for ss12992572.