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Submitted SNP(ss) Details: ss12992574           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1040240
RefSNP(rs#)rs9286791
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-17d11.p1cposition:193quality:40sequence:1bB531C17-4f06.p1cposition:83quality:23sequence:1bB15E13-3j18.q1kposition:-376quality:56sequence:1bB15E13-2g04.p1kposition:325quality:37sequence:1bB531C17-18g08.p1cposition:466quality:23sequence:1bB531C17-20h04.q1cposition:415quality:29sequence:1bB531C17-17c11.p1cposition:193quality:43sequence:1bB531C17-19g03.p1cposition:167quality:35sequence:1bB531C17-13f05.q1cposition:-159quality:40sequence:1bB15E13-1i10.q1kposition:179quality:37sequence:1bB531C17-18a03.q1cposition:165quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992574|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CCCGCGTGAT TACGTTCCAG GCCAGAAGAC AGAACGCGCC AGGCACCGCG GGCTCCCCGC
 CAGCCTGCTG CCCACGGTTC CTCGTGGGGT TCCCACTCTC TTCATCCCTG CTCTTCCTGA
 GCCACGCCAC ATGCACTTGC CCTGCAGAAT GTGGGGCTTA TGCAGGCCTG ACTGCCTGGG
 CAGCCAGCTT CTTTCCTTTA
 Y
 GACCAGCTGT GGGACCGTCT GCATGGGGAC AGGGAGCTCA TCTCGTCCTC CTGTTGGATA
 TAAACGCGGG ATCGCTGGTT CCCTGAGTCT TCTGGACATT CGAGTTGTTC CTGGTTCCTT
 CCCTTCTATT TAAACAACAC TCACGAGgct gggcgcggtg gctcacgcct gtaatcccaa
 cactttggga ggcagaggtg

  Submitted Frequency for ss12992574 back to top
There is no frequency submission for ss12992574.


  dbSNP summary of Genotypes for ss12992574 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992574.


  Submitted individual genotype for ss12992574 back to top
There is no individual genotype data for ss12992574.