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Submitted SNP(ss) Details: ss12992578           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1043867
RefSNP(rs#)rs9424287
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize8
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB15E13-1o03.p1kposition:292quality:56sequence:1bB531C17-22c06.p1cposition:196quality:56sequence:1bB531C17-1b03.q1cposition:-359quality:29sequence:1bB531C17-16g12.q1cposition:215quality:42sequence:1bB15E13-2m06.q1kposition:183quality:51sequence:1bB531C17-2b09.q1cposition:201quality:56sequence:1bB531C17-22g07.p1cposition:124quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992578|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 AGGTAACAAC TCGAATGCAA ACACAAAGGC TCCCACATTC TGGAGATAAC CAGGGGAAAA
 GATGTATGTG CAGTGAAAAC TGCTTCTATT GGGTAGAAAA GGGGCAGGAT GCCCTGTAGG
 AAAAGCAGCC CCTGGAGGAA GGCGGATGGA AGCGGGGCAG GACGGCGCCT CTGTCTGGGG
 TGGAGGAAGG CAGATGGAAG
 Y
 GGGGCAGGAT GGCGGCCTCT GTCCAGGGTT CTTCCAAGAT GCCTGATTCT ATCGACCCGG
 AAACATGTCT TCTGTAATTA CAGAACTTAA TTCTTTAAAG TCCCCTAGAA ATGTAATATA
 AAATGAATGT ATTTACAGTT GGTGGCACTG CTAGCCAGGG CTCACCCAAG TCCCTCCAAC
 ACAGGGCCAC TGGGACCCCC

  Submitted Frequency for ss12992578 back to top
There is no frequency submission for ss12992578.


  dbSNP summary of Genotypes for ss12992578 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992578.


  Submitted individual genotype for ss12992578 back to top
There is no individual genotype data for ss12992578.