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Submitted SNP(ss) Details: ss12992580           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1045357
RefSNP(rs#)rs9424289
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize18
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-19d11.q1cposition:408quality:26sequence:1bB531C17-8a03.p1cposition:209quality:43sequence:1bB531C17-12a11.q1cposition:238quality:37sequence:1bB531C17-20e09.p1cposition:-76quality:40sequence:1bB531C17-22f05.p1cposition:486quality:35sequence:1bB531C17-17b02.p1cposition:-249quality:43sequence:1bB531C17-11c03.p1cposition:-505quality:28sequence:1bB531C17-7b10.p1cposition:355quality:35sequence:1bB531C17-21b02.p1cposition:-272quality:51sequence:1bB531C17-21g03.p1cposition:-630quality:25sequence:1bB531C17-16c10.p1cposition:-537quality:32sequence:1bB15E13-3a03.q1kposition:-706quality:56sequence:1bB531C17-4b04.q1cposition:-365quality:40sequence:1bB15E13-1e07.q1kposition:-628quality:34sequence:1bB15E13-1c21.p1kposition:-522quality:45sequence:1bB531C17-19b04.q1cposition:336quality:35sequence:1bB531C17-26b06.p1cposition:105quality:26

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992580|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CTTCCTTCAC CAAGTGAATC ATAAGGAAAA AGAACGAGAG AATGAACCTG TTCAAAACAG
 ACCAACCAGG CACCGGGGCC TTCTATGGAT CCCGGTAATC AGATGCTTCT GACCTGATGA
 GATGGCGGCA ATGTGACTGA CGTCTGGAAG GCTGAGGCTG CTGCTGTGGC TGTGTAAAGA
 AGTCCCGATT CCGAAAGCTC
 Y
 GACGGGAACA TTTACAGATG CAACAACGTG CTGTCTGGGT TGGCTTCAAC ATTACAAGAG
 AGGGGAGCAC GTGGGGGCAC GGGAGAAACA AGACGGGCTG AGTTGCTAGT TGCGCAAGCT
 CAGTGACCGT GACAAGGGAG AGTCCTGAGG GTTTCTGTCA CTTTTCTGTG TACTCTGTGA
 TGCATTTCAA ACTCTGAGAG

  Submitted Frequency for ss12992580 back to top
There is no frequency submission for ss12992580.


  dbSNP summary of Genotypes for ss12992580 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992580.


  Submitted individual genotype for ss12992580 back to top
There is no individual genotype data for ss12992580.