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Submitted SNP(ss) Details: ss12992581           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1045414
RefSNP(rs#)rs1936378
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize14
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-12c03.q1cposition:383quality:40sequence:1bB531C17-22f05.p1cposition:429quality:56sequence:1bB15E13-1c21.p1kposition:-579quality:56sequence:1bB531C17-17b02.p1cposition:-306quality:45sequence:1bB531C17-19d11.q1cposition:351quality:56sequence:1bB531C17-21b02.p1cposition:-329quality:45sequence:1bB531C17-4b04.q1cposition:-422quality:46sequence:1bB531C17-7b10.p1cposition:298quality:56sequence:1bB531C17-8a03.p1cposition:152quality:45sequence:1bB531C17-8b11.p1cposition:-103quality:40sequence:1bB531C17-20e09.p1cposition:-133quality:39sequence:1bB531C17-12a11.q1cposition:181quality:50sequence:1bB531C17-19b04.q1cposition:279quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992581|allelePos=201|len=401|taxid=9606|alleles='A/C'|mol=Genomic
 CAGACCAACC AGGCACCGGG GCCTTCTATG GATCCCGGTA ATCAGATGCT TCTGACCTGA
 TGAGATGGCG GCAATGTGAC TGACGTCTGG AAGGCTGAGG CTGCTGCTGT GGCTGTGTAA
 AGAAGTCCCG ATTCCGAAAG CTCCGACGGG AACATTTACA GATGCAACAA CGTGCTGTCT
 GGGTTGGCTT CAACATTACA
 M
 GAGAGGGGAG CACGTGGGGG CACGGGAGAA ACAAGACGGG CTGAGTTGCT AGTTGCGCAA
 GCTCAGTGAC CGTGACAAGG GAGAGTCCTG AGGGTTTCTG TCACTTTTCT GTGTACTCTG
 TGATGCATTT CAAACTCTGA Gagagagaga gactgacaga cagacagagg gacagacaga
 cagaGGGACA CAGAGAGCCA

  Submitted Frequency for ss12992581 back to top
There is no frequency submission for ss12992581.


  dbSNP summary of Genotypes for ss12992581 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992581.


  Submitted individual genotype for ss12992581 back to top
There is no individual genotype data for ss12992581.