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Submitted SNP(ss) Details: ss12992582           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1046286
RefSNP(rs#)rs2027548
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize14
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bB531C17-21a08.p1cposition:416quality:40sequence:1bB531C17-23g05.q1cposition:-172quality:37sequence:1bB15E13-1e07.p1kposition:585quality:36sequence:1bB531C17-16a10.q1cposition:143quality:35sequence:1bB531C17-11c03.q1cposition:122quality:35sequence:1bB531C17-16f10.p1cposition:330quality:43sequence:1bB531C17-7a08.q1cposition:-155quality:26sequence:1bB15E13-3n15.q1kposition:563quality:56sequence:1bB531C17-4b04.p1cposition:164quality:29sequence:1bB531C17-15c05.q1cposition:-140quality:46sequence:1bB531C17-17b02.q1cposition:330quality:42sequence:1bB531C17-11h11.q1cposition:158quality:45sequence:1bB15E13-1k17.q1kposition:-289quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992582|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AGAGCTTGGA ATCAGGTAGG AAAGAGAATC GTTTAACCAA ATAGGGCTGG GTTTTATTAG
 GCAAAAGGGA CCGCAGTGTT ACAGAATCTG GGCAAGATGT CACTGAGGGT CTCATTATCT
 GGATAAAGGC AATGACCAGA ACAAAATAAA ACCATTTCAT GCTGTATCCC AGTGACACAG
 GCTGGGCCTC AGTGAGTTGA
 R
 GCTCCTCGAT AAACCATTCA TAAATGTACG GAAGGAAATC ATGTGAACAC GTAGGTAAAC
 GGAACGACTG CTCAGACAGG GCTCACTAGA CGCTGTCCCC TCCCTGAACA CTCATGTACT
 GTACTCTGTG GCTATGGTCC CGCACTGACA CCACCACTGT CACCACCACT GCCATCCACA
 GGTGTGTCAC CTACTTCACT

  Submitted Frequency for ss12992582 back to top
There is no frequency submission for ss12992582.


  dbSNP summary of Genotypes for ss12992582 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992582.


  Submitted individual genotype for ss12992582 back to top
There is no individual genotype data for ss12992582.