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Submitted SNP(ss) Details: ss12992584           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1052890
RefSNP(rs#)rs1836
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize8
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1dJ897I12-13f08.q1cposition:399quality:56sequence:1dJ897I12-10c10.p1cposition:537quality:40sequence:1dJ897I12-10d11.p1cposition:-179quality:44sequence:1dJ897I12-4b04.p1nposition:-260quality:38sequence:1dJ897I12-4d01.p1nposition:503quality:40sequence:1dJ286D6-26e02.p1cposition:-258quality:42sequence:1dJ897I12-8g10.q1cposition:-290quality:38

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992584|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 CTGTAGCCGC TTTTCTCCGT GCCTGGTAAG AAAATTATTT TTCCATTAGA ACAGCTTGTT
 AGGGTAATCT TAGAAACTGG GAGACAAATT ATGGCATATC AACTATATTT CTTATAAATT
 ATAATATTCA CTAAGACTAA TAACAAGTTA GAATAAGTCT TTTCCATTGA TTTCATTGGT
 GTCTATTGAT AGATAAACCC
 R
 CTGTGTCCTC ACGGCTATCG TTATTCCGTT TGCAGCCTGG GAACCTAAGG GTCTCACTGG
 CAGAAAGTGG AGCAGCCGGG ATCTGAATGC GGGAACCTGT GTTCTTTCTT AGCCAGGACG
 CCGGGGCTTC CCATACATGT GGCTCCTTCA AATGACATAT TTACTTATTT ACGTACCGAG
 TAACTGAGTA ACTTCTTCAA

  Submitted Frequency for ss12992584 back to top
There is no frequency submission for ss12992584.


  dbSNP summary of Genotypes for ss12992584 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992584.


  Submitted individual genotype for ss12992584 back to top
There is no individual genotype data for ss12992584.