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Submitted SNP(ss) Details: ss12992586           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1053363
RefSNP(rs#)rs2275826
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1dJ897I12-12g02.q1nposition:93quality:56sequence:1dJ897I12-15f11.p1cposition:350quality:40sequence:1dJ897I12-8g10.p1cposition:361quality:35sequence:1dJ286D6-25a04.p1cposition:-359quality:40sequence:1dJ286D6-20c12.p1cposition:150quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992586|allelePos=201|len=401|taxid=9606|alleles='C/G'|mol=Genomic
 TTAGCAAATC CCTCAAAAAT TGTTTTGTAG AGAATGTTCC TGCGTGTGTT GCTGTCGTCT
 GGAGGAAGGT ACTCCAGGAT GGAAGCCTGG TGCTGTCTGT ACATGTCCAA AATAATTCGA
 ACCGCCGTCT CGCGGACCTC ATACACTCTA TGCTCCAGGG CACTCACTGA AAACTAAAGT
 TGGGAGGGGC TCTTGTTACT
 S
 ATTCTTAAAA TAAAACTAAT TTCTTCCAGC TTACAAAAAA GGTACATTAT AAACATGTGA
 AAAATAAAAG AGAAAACATC CGTATTAAGT ATTATGAAAT ACTTCAAACA TAAAACCTCA
 CGGATCTACC GTCTCATCGT AAGCCGTGTT ATACTTTCAT CACGCTTGTT TTGGATCTTT
 TTTAAGAAAC AGAACGCTGT

  Submitted Frequency for ss12992586 back to top
There is no frequency submission for ss12992586.


  dbSNP summary of Genotypes for ss12992586 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992586.


  Submitted individual genotype for ss12992586 back to top
There is no individual genotype data for ss12992586.