| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1053363 | | RefSNP(rs#) | rs2275826 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 6 | | Population | N.D. |
| | Allele | | Observed Allele | C/G | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence:1dJ897I12-12g02.q1nposition:93quality:56sequence:1dJ897I12-15f11.p1cposition:350quality:40sequence:1dJ897I12-8g10.p1cposition:361quality:35sequence:1dJ286D6-25a04.p1cposition:-359quality:40sequence:1dJ286D6-20c12.p1cposition:150quality:35 |
>gnl|dbSNP|ss12992586|allelePos=201|len=401|taxid=9606|alleles='C/G'|mol=Genomic TTAGCAAATC CCTCAAAAAT TGTTTTGTAG AGAATGTTCC TGCGTGTGTT GCTGTCGTCT
GGAGGAAGGT ACTCCAGGAT GGAAGCCTGG TGCTGTCTGT ACATGTCCAA AATAATTCGA
ACCGCCGTCT CGCGGACCTC ATACACTCTA TGCTCCAGGG CACTCACTGA AAACTAAAGT
TGGGAGGGGC TCTTGTTACT
S
ATTCTTAAAA TAAAACTAAT TTCTTCCAGC TTACAAAAAA GGTACATTAT AAACATGTGA
AAAATAAAAG AGAAAACATC CGTATTAAGT ATTATGAAAT ACTTCAAACA TAAAACCTCA
CGGATCTACC GTCTCATCGT AAGCCGTGTT ATACTTTCAT CACGCTTGTT TTGGATCTTT
TTTAAGAAAC AGAACGCTGT
There is no frequency submission for ss12992586.
No sufficient data to compute Hardy-weinberg probability for ss12992586.
There is no individual genotype data for ss12992586.
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