| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1054093 | | RefSNP(rs#) | rs4648417 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 6 | | Population | N.D. |
| | Allele | | Observed Allele | C/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | c/t_g |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence:1dJ897I12-4b04.q1nposition:361quality:40sequence:1dJ897I12-16f09.p1cposition:92quality:39sequence:1dJ897I12-13d02.p1cposition:-400quality:48sequence:1dJ286D6-25b12.q1cposition:-195quality:56sequence:1dJ897I12-3d09.q1nposition:64quality:29 |
>gnl|dbSNP|ss12992587|allelePos=493|len=693|taxid=9606|alleles='C/T'|mol=Genomic GGGCCCACAG TTTCTCATCC TCCTTGGAGG TGTGCGCTCC TGCGTAGCCG ATGTGcagat
ttcaggtttt tggatttggg atccaaacca gtaagtataa tggaagtatt ccagaatccg
aaaacaatct gaaatcctaa acacttctgg tcttaagcat tccagataag gggcttcaac
ctgTACCTGA TATTCTCCAT CACACTGCTG TTATTGTCTC TTAAAGACAg gccgggcgca
gtggctcacg cctgtaatcc cagcactttg ggaggctgag gcgggcggat cacgaggtca
ggagatcgag accatcctgg ctaacacagt gaaaccccgt ctctactaaa atacacgaaa
aaattagccg ggcatggtgg tgggcatcct gtagtaccag ctacttggga ggctgaggca
ggagaatggc atgaacccag gaggcagggc ttgcagtgag ccgagatggc accactgcac
ctccagcctg gg
Y
gacagaacga gactccatct caaaaaaaaa aaaaaaaaaa gacaaagaaa TATTTTTTAT
GATTTGTTTC TCTCCACAGA TAAAGATCTG CACACACCAT GCACCACCGA GTAGGATTAG
ACAGCAGGAC GCATGTGGGG GCCCCCATTT GTTGGATGAA ACACTGGCTA TTTTTCTGAA
ATCACTGCCT CAGTCATTCC
There is no frequency submission for ss12992587.
No sufficient data to compute Hardy-weinberg probability for ss12992587.
There is no individual genotype data for ss12992587.
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