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Submitted SNP(ss) Details: ss12992587           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_1054093
RefSNP(rs#)rs4648417
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1dJ897I12-4b04.q1nposition:361quality:40sequence:1dJ897I12-16f09.p1cposition:92quality:39sequence:1dJ897I12-13d02.p1cposition:-400quality:48sequence:1dJ286D6-25b12.q1cposition:-195quality:56sequence:1dJ897I12-3d09.q1nposition:64quality:29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992587|allelePos=493|len=693|taxid=9606|alleles='C/T'|mol=Genomic
 GGGCCCACAG TTTCTCATCC TCCTTGGAGG TGTGCGCTCC TGCGTAGCCG ATGTGcagat
 ttcaggtttt tggatttggg atccaaacca gtaagtataa tggaagtatt ccagaatccg
 aaaacaatct gaaatcctaa acacttctgg tcttaagcat tccagataag gggcttcaac
 ctgTACCTGA TATTCTCCAT CACACTGCTG TTATTGTCTC TTAAAGACAg gccgggcgca
 gtggctcacg cctgtaatcc cagcactttg ggaggctgag gcgggcggat cacgaggtca
 ggagatcgag accatcctgg ctaacacagt gaaaccccgt ctctactaaa atacacgaaa
 aaattagccg ggcatggtgg tgggcatcct gtagtaccag ctacttggga ggctgaggca
 ggagaatggc atgaacccag gaggcagggc ttgcagtgag ccgagatggc accactgcac
 ctccagcctg gg
 Y
 gacagaacga gactccatct caaaaaaaaa aaaaaaaaaa gacaaagaaa TATTTTTTAT
 GATTTGTTTC TCTCCACAGA TAAAGATCTG CACACACCAT GCACCACCGA GTAGGATTAG
 ACAGCAGGAC GCATGTGGGG GCCCCCATTT GTTGGATGAA ACACTGGCTA TTTTTCTGAA
 ATCACTGCCT CAGTCATTCC

  Submitted Frequency for ss12992587 back to top
There is no frequency submission for ss12992587.


  dbSNP summary of Genotypes for ss12992587 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992587.


  Submitted individual genotype for ss12992587 back to top
There is no individual genotype data for ss12992587.