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Submitted SNP(ss) Details: ss12992588           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_112882
RefSNP(rs#)rs3100865
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize7
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bA740P5-12h06.p1cposition:99quality:40sequence:1bA740P5-39d04.q1cposition:290quality:56sequence:1bA740P5-9e01.p1cposition:-296quality:37sequence:1bA740P5-24g07.p1cposition:86quality:35sequence:1bA740P5-21d09.p1cposition:-161quality:40sequence:1bA740P5-9e01.q1cposition:-276quality:26

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992588|allelePos=201|len=401|taxid=9606|alleles='T/G'|mol=Genomic
 CATGAGCTTC ATCTACATGG GTGGGGGACG GCGGCTTGGG GCCTTGATTC AGGTGCTGGG
 GCCCCTTCTG TCCCTGTCCC TGCCCTGAGG ACTGTTGGGG TCAACCCTGG CTGAGTGTGG
 ACGTTGCTGG TTCAGCGGAT ACCCTGAGTG CCGAGGCCAG GTAGGCCGCT GGGGCTCAGG
 GGGACAGGCT GGCTGAGGAC
 K
 CTGGGGATCA CGAGTCCGTG GTGGGCTTTG GAGCCAGCCT GGGTGGGGCT CCAGGTGGGG
 ACAGAGGAGG CTCTGTGTCT GGGCTCTGGG GGCCCCGCTG GAAGAGGCCA AGGACATCAG
 AACTGACGGG AGGACCAGGA AGGGGTGGCC GGGGGCTGAG GGAGGTGGGG AAGTCGGGGG
 CCCGAAGCCA AGGGTGGGGG

  Submitted Frequency for ss12992588 back to top
There is no frequency submission for ss12992588.


  dbSNP summary of Genotypes for ss12992588 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992588.


  Submitted individual genotype for ss12992588 back to top
There is no individual genotype data for ss12992588.