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Submitted SNP(ss) Details: ss12992590           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_124196
RefSNP(rs#)rs2842910
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize5
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bA740P5-8b10.q1cposition:273quality:40sequence:1bA740P5-13f03.p1cposition:406quality:42sequence:1bA740P5-9e06.q1cposition:332quality:51sequence:1bA740P5-23a04.p1cposition:304quality:33

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992590|allelePos=296|len=496|taxid=9606|alleles='T/C'|mol=Genomic
 CCTTCTCCCA GGGGACCCCC TCCCTCAGTG GAGATTCCAT GGTTGGAAAA GCGTCAGTGA
 CTGGGTCCCC TGTGTGAAGT CGAGAATAAT CCCCAGcagt ggttctcagc tcggggtggg
 gggtgggtgg acattgggca gcgcccagag acatttatgg ttgtcacctt caggggatgc
 cacaggcttc cagtagggga aggccagaga agctgccaac accttgtgaa gaccaggttg
 gccccaccac aaagggtcat ctggccccaa agtctaaagt gttgagattg TGCAA
 Y
 GCTCGTCCAG GGTCACTTTG TGAGATCCGT CTGCCTCCTT CCTGCACAGG CCACCGTGCC
 AGGAATCCCT GTGCCTGCTG CTCTGGGCCC AGCCTCAGCC TTGTCACAGG GTGCTGCTCT
 GGCTTTCCTC TCCTGGGTGA GAGAAGCTCC AGGGGCATCT GCTGTCTCTC CCCACCCCAA
 CAGGTGTCAT TCTGTGGGTT

  Submitted Frequency for ss12992590 back to top
There is no frequency submission for ss12992590.


  dbSNP summary of Genotypes for ss12992590 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992590.


  Submitted individual genotype for ss12992590 back to top
There is no individual genotype data for ss12992590.