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Submitted SNP(ss) Details: ss12992591           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004321.15_129187
RefSNP(rs#)rs2842916
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize8
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bA740P5-23c11.p1cposition:169quality:37sequence:1bA740P5-15f08.p1cposition:231quality:56sequence:1bA740P5-21h09.p1cposition:201quality:50sequence:1bA740P5-34c08.q1cposition:326quality:27sequence:1bA740P5-15h11.p1cposition:-205quality:35sequence:1bA740P5-4h02.p1cposition:-255quality:40sequence:1bA740P5-13a03.q1cposition:-69quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992591|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GCTCACTGGC AAGGTCTGGA GGAGGCTGCT CCCAGTGCCC ACAGAGGACC CTCAATGGGG
 CGGGGCAGGG CAGTGCCACC TGCCTGGCGC CGGGCACCCC CACCCTCCTG GGAGCCATGG
 TGCTGGAGGA TGAGGACAGT CCTGCCTCTG AAAAGCCGTG GCCCTGAACC CACAGCAGGG
 ATGGGAGTGC CCGATTCAGA
 Y
 GCTGTCTGCC ATCTGCACTT GGGGCAAACT CTCCTGTCCC TGAGAGGCTT ACCTGGCTGC
 AGGGAGGGAG GAGCCCAGCC GTGCGGGGAT GTTTATCTCT GCAGAGGAGC TCTCCTGGGC
 GACAGCCCCC TCGCACTGTA ATTCAAGGGA TTTTCCTCGC GTGTCATTTT TAATAGATGT
 GATTACGGTT TGGAGTCTGA

  Submitted Frequency for ss12992591 back to top
There is no frequency submission for ss12992591.


  dbSNP summary of Genotypes for ss12992591 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992591.


  Submitted individual genotype for ss12992591 back to top
There is no individual genotype data for ss12992591.