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Submitted SNP(ss) Details: ss13254267           
Submitter
HandleSC_SNP
Submitter SNP IDNT_009799.12_10115658
RefSNP(rs#)rs1538924
Submitted Batch IDCHR13_NA11321
Submitted DateOct 22, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR13_NA11321
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:13S212-590d01.q1kposition:121quality:35sequence:13S212-187e08.p1kposition:220quality:37sequence:13S212-222j24.p1kposition:650quality:56sequence:13S212-41g21.p1kposition:-517quality:32sequence:13S212-186k03.q1kposition:711quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13254267|allelePos=338|len=637|taxid=9606|alleles='T/A'|mol=Genomic
 TCAGGGTGAG TTGTCCCCTA GCAAGATACT CTAATTTCTC CCCCTTATTA AAATATATCC
 CCTTGTTaca atgtatatag agatcaaaat acaacatggt accctgtaaa tatacacaat
 tattatttgc caatttaaaa aataTAAATT TCAAAAATAA AAAAGCCCAA ACCAAACAga
 tatggtttgg ctgtgtcccc acccaaatct catcttgaat tgtagctccc gtaattccca
 tgtgttatga aagggagctg gtgggagata attgaatcgt ggggacagtt tgtcccatgc
 tgttctcatg gtggtgaata agtctcaaga gatttga
 W
 ggtggtataa ggggtttcct ctttgcttgg ttctcattgt ctctttcctg ctgacatgtg
 agacgtggct ttcgccttct gccatgattg tgaagcctcc ccggccacgt ggaactgtga
 gtccattaaa cctctttttc tttataaatt acccagtctt gggtatgtct ttatcagcag
 catgaaaatg gactaataTG CAAACCAAAA CAAATATATC CTATTAGGGC CCCCCCTGTT
 TCTCCACCAT TGCCAAATGT GAATAAATCT CAGAGTGGGC ACAGATCAGG CTCATACTG

  Submitted Frequency for ss13254267 back to top
There is no frequency submission for ss13254267.


  dbSNP summary of Genotypes for ss13254267 back to top
No sufficient data to compute Hardy-weinberg probability for ss13254267.


  Submitted individual genotype for ss13254267 back to top
There is no individual genotype data for ss13254267.