NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss13254275           
Submitter
HandleSC_SNP
Submitter SNP IDNT_009799.12_10184185
RefSNP(rs#)rs1754962
Submitted Batch IDCHR13_NA11321
Submitted DateOct 22, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR13_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:13S212-403m15.q1kposition:215quality:56sequence:13S212-595f07.p1kposition:-527quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13254275|allelePos=354|len=583|taxid=9606|alleles='T/C'|mol=Genomic
 CATTTCTTCC ACAGCTATTT CTCATTTCTC TTTCCAGCCT CCTGTGCATG TGGATTTGGA
 ATGTAGATGC TTTTATTGTT TTCTTAAAAA TATCAATCAg gctggtccaa gtgcagtggt
 gtttatcagt tcagatttct atgttccttt tccactccca ctgcttcacc ttcacctgac
 tagcctAAtt ttttttgttt gtttgttttt gagatggagt ttcgttcttg ttgcccaggc
 tggaatgcag tggcatgatc tcggctcact gcaacctctg cctcccgggt tcaagtaatt
 cttctgtctc agcctcccta gtagctggga ttacaggcgc atgccaccat gcc
 Y
 ggctaatttt tgtattttta gtagagacgg ggtttcgtca tattgatcag gctggtctca
 aactcctgac ctcaggtgat ctacttgcct cggcctccca aagtgctggg attgtaagtg
 ttagccactg cgcccagccT AAATTTTTGT TAATAAAGAA ATAAAGATAG AAAACAACAA
 ATATTTTAAA ACCACCTAAC AACTTTAGGA CATTTAGGAA ATAGGGGAA

  Submitted Frequency for ss13254275 back to top
There is no frequency submission for ss13254275.


  dbSNP summary of Genotypes for ss13254275 back to top
No sufficient data to compute Hardy-weinberg probability for ss13254275.


  Submitted individual genotype for ss13254275 back to top
There is no individual genotype data for ss13254275.