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Submitted SNP(ss) Details: ss13254277           
Submitter
HandleSC_SNP
Submitter SNP IDNT_009799.12_10185109
RefSNP(rs#)rs9550382
Submitted Batch IDCHR13_NA11321
Submitted DateOct 22, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR13_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:13S212-595f07.q1kposition:368quality:51sequence:13S212-434l16.q1kposition:-840quality:29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13254277|allelePos=656|len=806|taxid=9606|alleles='G/C'|mol=Genomic
 TGTTCATTCC TTCCCACCTT AGCCTGTGTG CAAACGCATC GTCTACACAG CAGCAGCAGC
 AGAAGACAGA GATACACCCA CATTCCCTAA CCTGCCATTG AAGCTGAGAT TTTTCCAGAT
 GCAGATCCTG CGAAAAGGAT TCATGAGAGG ATTATTGATT TGGGAAGTTC AGGTAGCAGT
 GTTAGTGTAG TGGGGAAGCA AAACACAGAA GGAAAGGCAA CCAATAAAGA GGCACTTAAg
 gctgggcgcg gtggctcacg cctgtaatcc cagcactttg ggagactgag gcgggcagat
 cacctgaggt caggagtttg agaccagcct agccaacatg gtgaaacgcc gtctctacta
 aaaatacaaa aattagctgg gcgtggtggc gcgcacctgt aatcccagct actcgggagg
 ctgaggcagg agaattgctt gaacccagga gatggaggtt gcagtgagcc aatacagtgc
 cactgcactc cagcctgggt gacagagtga gactctgcct caaaaataaa aaaaaaataa
 aaataaataa aAAAAGAGGG GCTTAAGTGA TGGAGGCTTA CTCCCCAAGA AAATTCGGGG
 ACATGGTGCT AAACCTATAC TTCCAAATAT CCGACTCTAG GAGTGATGGA GCTGG
 S
 GTATCTATGC ATTAACTGCC CACGGTGATT GCTTGAGGAC TGTTCATGGG GAGGAAAGGG
 GGAGCCAGTG CCTGAGCTGT GTGGGTGTCC ACAGCTGGAG GTGGTTAGCT GGAACTTGGC
 TGCAACACCC TGAGAGCCCT AAGAGACATG

  Submitted Frequency for ss13254277 back to top
There is no frequency submission for ss13254277.


  dbSNP summary of Genotypes for ss13254277 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118G=0.71186441
C=0.28813559G/G=0.49152541
C/G=0.44067797
C/C=0.06779661
Pr(chiSq=0.325,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.84444445
C=0.15555556G/G=0.73333335
C/G=0.22222222
C/C=0.04444445
Pr(chiSq=1.069,df=1)
=0.317
Genotype
Freq.
HapMap-JPT9090G=0.82222223
C=0.17777778G/G=0.66666669
C/G=0.31111112
C/C=0.02222222
Pr(chiSq=0.185,df=1)
=0.752
Genotype
Freq.
HapMap-YRI120120G=0.76666665
C=0.23333333G/G=0.60000002
C/G=0.33333334
C/C=0.06666667
Pr(chiSq=0.280,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss13254277 back to top
There is no individual genotype data for ss13254277.