NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss13254284           
Submitter
HandleSC_SNP
Submitter SNP IDNT_009799.12_10203994
RefSNP(rs#)rs9550386
Submitted Batch IDCHR13_NA11321
Submitted DateOct 22, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR13_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:13S212-122i09.p1kposition:444quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13254284|allelePos=536|len=686|taxid=9606|alleles='C/T'|mol=Genomic
 ACTCTTTATC TGGATGACAT CCAGAGCCAC TGTCTTCTAT ATGATGACAT TCTAGCTACT
 TTACCCTTTC GGTACTTCTA CATCAGCATA TACTTCTATT Atcactatga cagggaagat
 atggagaatc atgcttcaac ttctcaatgc ttctgtgcag gaatgaaaca cacacatcac
 ttctactcac attttcattg gccaggatta gtcacatggc tatatctaat tttttttttt
 tttttttttt tttggagata gagtctcggt gtatcctcta ggctggagtg cagtggtgag
 atctcggttc aatgcaactt ccgcctcccg ggttcaagcg attctcatgc ctcaacctcc
 ctagtagctg ggattacagg catctgccac catgccaggc taattttgtt ttgtattttt
 tagtagagac agggttttgc catgttggcc aggctggtct caaactcctg acttcaggtg
 atccacctgc cttgacctcc caaagtactg ggattacagg catgacccac tgcac
 Y
 tggctGGCTA TATTTAAGAG ACAAGAAAAA GCGTCACCTT CTTGCATACT TGAAAGTAAG
 AGAAAAACCA ATTATGGTTG AATGGAGATA AACATCTATT GCATAGGTGT CATTTTCTAG
 GATTTCTCAA TCTCGCCAAC TTAACAAAAA

  Submitted Frequency for ss13254284 back to top
There is no frequency submission for ss13254284.


  dbSNP summary of Genotypes for ss13254284 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.84070796
T=0.15929204C/C=0.69026548
C/T=0.30088496
T/T=0.00884956
Pr(chiSq=1.720,df=1)
=0.200
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.84883720
T=0.15116279C/C=0.74418604
C/T=0.20930232
T/T=0.04651163
Pr(chiSq=1.462,df=1)
=0.251
Genotype
Freq.
HapMap-JPT170170C=0.82941175
T=0.17058824C/C=0.68235296
C/T=0.29411766
T/T=0.02352941
Pr(chiSq=0.132,df=1)
=0.752
Genotype
Freq.
HapMap-YRI224224C=0.83482140
T=0.16517857C/C=0.68750000
C/T=0.29464287
T/T=0.01785714
Pr(chiSq=0.523,df=1)
=0.479
Genotype
Freq.
HAPMAP-ASW9898C=0.87755102
T=0.12244898C/C=0.75510204
C/T=0.24489796
Pr(chiSq=0.219,df=1)
=0.655
Genotype
Freq.
HAPMAP-CHB8282C=0.78048778
T=0.21951219C/C=0.63414633
C/T=0.29268292
T/T=0.07317073
Pr(chiSq=0.872,df=1)
=0.371
Genotype
Freq.
HAPMAP-CHD168168C=0.83333331
T=0.16666667C/C=0.66666669
C/T=0.33333334
Pr(chiSq=1.027,df=1)
=0.317
Genotype
Freq.
HAPMAP-GIH176176C=0.78409094
T=0.21590909C/C=0.61363637
C/T=0.34090909
T/T=0.04545455
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.81111109
T=0.18888889C/C=0.63333333
C/T=0.35555556
T/T=0.01111111
Pr(chiSq=2.314,df=1)
=0.150
Genotype
Freq.
HAPMAP-MEX100100C=0.79000002
T=0.20999999C/C=0.63999999
C/T=0.30000001
T/T=0.06000000
Pr(chiSq=0.459,df=1)
=0.527
Genotype
Freq.
HAPMAP-MKK286286C=0.79020977
T=0.20979021C/C=0.63636363
C/T=0.30769232
T/T=0.05594406
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.
HAPMAP-TSI174174C=0.90229887
T=0.09770115C/C=0.80459768
C/T=0.19540229
Pr(chiSq=0.190,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss13254284 back to top
There is no individual genotype data for ss13254284.