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Submitted SNP(ss) Details: ss13302768           
Submitter
HandleSC_SNP
Submitter SNP IDNT_009799.12_1027713
RefSNP(rs#)rs9578055
Submitted Batch IDCHR13_NA17119
Submitted DateOct 22, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR13_NA17119
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:Chr_13_17119_2-252k04.p1kposition:508quality:32sequence:Chr_13_17119_2-185b11.q1kposition:537quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13302768|allelePos=2000|len=2345|taxid=9606|alleles='G/T'|mol=Genomic
 Tgtctcgcta ttatttaact ttttgttatt tctatttata tcttattata ccatctatgt
 cttgaaaagt tgtagttaat atttttgatt ggctcatagt ttagtctctc tacttagaat
 aagagtagtt tatacatcat agttacaatg ttataacatt ctgcattttt ctgtatacct
 actattacca gtgagtttta taccttcagg ttgttactta ttgctcatta atgtccttat
 ctttctgatt gaaatactcc ctttagcatt tcttctagga caggtctggt gttgacaaaa
 tccctcagct tttgtgtgga aaagtcttta tttccccttc actttgaagg atattttcac
 tggatacact gttctagggt aaatgttttt ttccttcagc actttcaata tgtcatgcca
 ctctctcctg gcctgaaacg tttctactaa agagtctgct gccagatata ttgtagctcc
 atcgtatatt attggtttct tttctcttgc tgcttttaag atcctttctt tatccttgat
 ctttgggact gtgattatta aattccttga ggtagtcttc tttgagttac atctgctcgg
 tgttttataa ctttcttgta cttggatatt gatatctttc tgtaggtttg ggacgttctg
 ttactatccc tttgaataaa ctttctacac tccccacctc ctctttaagg ccaataccac
 ttagatttgt ccttttgagg ctattttcta gatcctgtag gcatgcatca ttgtttttta
 ttctttcctt tgtctcctct atgtattttg aaatagcctg tcttcaagct cattaattct
 ttcttctggt ttatcaattc tgctattaaa agactctaat gcattctttg gtgtgccaat
 tacatttttt ggctccagaa tttctgcttg attcttttaa attatttaat ttctttgtta
 aacttatcta atagaattat gaattccttc tctgtcttat cttgaatttc tttgagttcc
 ctcaacacag ctattttgat ttctttgtct aaaaggtcac atatatctgt ttctacagga
 ttggctcctg gtgtcttatt tagttcattt ggtgaggtca tgttttcctg gatagtgttg
 atgctagcag atgttctttg gtgtctaggc attgaagagt taggtattta ttgtagtttt
 cactgcattt attgtagttt tcactgtatt tattgtagtt ttcactgtca gggcttgttt
 gtacccatct ttcttgggaa ggctttccag atatttgaaa gaacttggat attgtgatct
 aagctctatc tgctctaggc ggcaccccaa gcctcctaaa ctctgtggtt cttgcagact
 tatagtggta ctgccttaat ggtcttggac aagatccagg ataattctct gcattaccaa
 aaggagactc ttgttttctt cccttacatt ctcccaaaca aagagtctct ctctctctct
 gttctgaggc acctaaagct tggggttgag tgacacaagc acccctgtgg ccaccaatac
 tgtgactgca ttgggtcaga cctgaggcca gcacagcact gggtcttgcc caagacctgc
 tgtaaccact ccttagctat tgcagaagtt tgctgaaggc cctggggctc tacagtcatc
 acatggtaaa aacagccagg cctgtgtcct tcccttcagg atggcaagtt gtcctagcct
 ccaggtggat ccaaaggtgc tgtctgggaa tcagggccta gatcaaaaac tttaaaagtc
 tacctagtgt tttattgtgc tacggctgag ctgtcactca aaccacaaga tgcagtccct
 cccactcttt ccacccctgt ccaaaggcag aggagcatca atccatggcc acctcaaaca
 caggccatgg ggggtactgc cagactacca ccaatgttct cataaggccc aaaggctctt
 aagtcagttt gtggtgaat
 K
 ctCCTGTTAA TTATTTTAAA ATGCtttttt tttttttttt gagatggagt ctcgccctgt
 cacccaggct agagtgcaat ggcgtgatct cagctcaacg caacttctgc ctcccaggtt
 caaacaattc tcctgcctca gcctcccaag tagctgggat tacaggcaac caccaccatg
 cccagctaat ttttgtattt ttaatagaga cggggtttca ccatgttggc caggattgtg
 tcgaactcct gaccttggga tcctcccacc tcagcctccc aaagtgctTC TTATAAAAGT
 ACAAAATAGC TTAATGCATT ATAAAAATAA TCAAACTTAC CCTTC

  Submitted Frequency for ss13302768 back to top
There is no frequency submission for ss13302768.


  dbSNP summary of Genotypes for ss13302768 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118G=0.91525424
T=0.08474576G/G=0.83050847
G/T=0.16949153
Pr(chiSq=0.082,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.97777778
T=0.02222222G/G=0.95555556
G/T=0.04444445
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090G=0.98888886
T=0.01111111G/G=0.97777778
G/T=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss13302768 back to top
There is no individual genotype data for ss13302768.

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