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Submitted SNP(ss) Details: ss13378431           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011516.5_11016
RefSNP(rs#)rs9617528
Submitted Batch IDCHR22_NA17119
Submitted DateOct 23, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR22_NA17119
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:22Chr_22_17119_3-5b06.q1kposition:344quality:50sequence:22S17119-161n06.p1kposition:198quality:40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13378431|allelePos=1321|len=1471|taxid=9606|alleles='T/C'|mol=Genomic
 GGAAtgatat agtttggatg tttgtccctg ccaaatctca tgcaatttta attcccgatg
 ctggtggtgg gacctaatgg gaggcatttg ggccaggggg acagatacct catggcttgg
 tgctatcctt gcaatagtga gtgagtactc atgagatctt gctgtttaag gatgttgcac
 ctcccccaca actctctctc ttgcttctgc tttgccatgt gatgtggaag ctcccacttt
 ttaacttttg ccaagagtaa aggctccctg gggcctcccc agaagctgaa tggatgatag
 caccatgctt gtacagcttg cattaaagct tgtgaaccca ttaaacatat tttctttata
 tttacccagt tgaaggtatt tctttgtagc aaggcaagat tggcctaaca caTACCATCC
 Cgatagagtt tgaatatctg tccctgccca aatatcatgt tgaaatgtga tctctagttt
 tggaggtggg gcctagtggg aggtgtttcg atcatggggg tgaatcttca tgaatggcct
 gggacatccc cttggtgatg agtgagctct tgctctgagt tctcatgaga tctggacatt
 tacaggtgtg tggcaccccc gcccctgcca aaaaagtaaa cttgctcctg ctttcaccat
 gtgacatgcc tgctcctgct ttgccttctg ccagaattgt gaactttctg agacctcccc
 agaaatggat gccagcatta tgcttcctat acagcctgca gaaccatgag ccaattaact
 ctcttttttc tTTTTCTTtt tctttttctt tttctttttc tttttctttc tttctttctt
 tctttctttc tttctttctt tctttctttc tttctttctt tctttTTGtt ttctttcatc
 tttccttctt cttttttgat ggagtctcac tctgttgcct gggctggagt gcagtaagtg
 gtacgatatt ggctcactga aacctccgcc tcccgggttt aagtgattct cctgcctcca
 cctcccaagt agcttgggat tacaggcagc tgccactgca cccagctaat tttttgtatt
 tttaatagag atggggtttc aacatgttag ccaggctagt cttgaactcc tgacctcatg
 attcaccggc tttggcctcc caaagtgctg ggattacagc ctcttttctt atacattacc
 caatctcatg gagtttcttt atagcagggc aaggatggcc taTTCCACCC CCGCAGGATG
 TTATCCTTAT TGAGACCAGT TGGCCAGAAG AGAAATTAAG TTTACTGCAC TCTGATTTGG
 Y
 GTTGGTCCTA CAATCCTCAA ATAAGATTGA TCATAAACTT CAAAAGTCTA TTGACAAGGA
 AGCTATGCAT GTTGCAAGTT TCACTAAAGA ATATGATGAT GCATGTGGGG ACTTTTTTGG
 CTGGTTGTGT TGTTTACTGT CCTCTGATTC

  Submitted Frequency for ss13378431 back to top
There is no frequency submission for ss13378431.


  dbSNP summary of Genotypes for ss13378431 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU220220T=0.75000000
C=0.25000000T/T=0.53636366
C/T=0.42727274
C/C=0.03636364
Pr(chiSq=2.137,df=1)
=0.150		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8282T=0.79268295
C=0.20731707T/T=0.58536583
C/T=0.41463414
Pr(chiSq=1.042,df=1)
=0.317		Genotype
Freq.
HapMap-JPT168168T=0.82142860
C=0.17857143T/T=0.69047618
C/T=0.26190478
C/C=0.04761905
Pr(chiSq=0.966,df=1)
=0.343		Genotype
Freq.
HapMap-YRI220220T=0.95454544
C=0.04545455T/T=0.90909094
C/T=0.09090909
Pr(chiSq=0.022,df=1)
=1.000		Genotype
Freq.
HAPMAP-ASW9494T=0.91489363
C=0.08510638T/T=0.82978725
C/T=0.17021276
Pr(chiSq=0.066,df=1)
=1.000		Genotype
Freq.
HAPMAP-CHB8080T=0.80000001
C=0.20000000T/T=0.62500000
C/T=0.34999999
C/C=0.02500000
Pr(chiSq=0.352,df=1)
=0.584		Genotype
Freq.
HAPMAP-CHD170170T=0.78823531
C=0.21176471T/T=0.58823532
C/T=0.40000001
C/C=0.01176471
Pr(chiSq=3.338,df=1)
=0.100		Genotype
Freq.
HAPMAP-GIH170170T=0.77647060
C=0.22352941T/T=0.56470591
C/T=0.42352942
C/C=0.01176471
Pr(chiSq=4.118,df=1)
=0.050		Genotype
Freq.
HAPMAP-LWK178178T=0.89887643
C=0.10112359T/T=0.79775280
C/T=0.20224719
Pr(chiSq=0.216,df=1)
=0.655		Genotype
Freq.
HAPMAP-MEX100100T=0.87000000
C=0.13000000T/T=0.75999999
C/T=0.22000000
C/C=0.02000000
Pr(chiSq=0.038,df=1)
=1.000		Genotype
Freq.
HAPMAP-TSI170170T=0.74705881
C=0.25294119T/T=0.52941179
C/T=0.43529412
C/C=0.03529412
Pr(chiSq=1.959,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss13378431 back to top
There is no individual genotype data for ss13378431.

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