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Submitted SNP(ss) Details: ss13395358           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004464.15_1085246
RefSNP(rs#)rs9628619
Submitted Batch IDCHR22_NA17119.2
Submitted DateOct 23, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR22_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:22S17119-187g05.q1kposition:430quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13395358|allelePos=201|len=913|taxid=9606|alleles='T/A'|mol=Genomic
 AACAAAATTC TAATTGAAAA AAGATGACAA ATAGAAAAAG ATAATTTTTG AATGTCCAAT
 TCATGTTTCC ATTCAATAAA GAAAGTCATC TTCATCTCTG GCACATTTTA AAAACCATTC
 ATACATAAAA ATTCAATATC AATAAAATCT ATTAAGCATC TACAAAATAT AGGGCACTGG
 TATAGCGATA TCAAGATTCT
 W
 GTTCTCAAGT CCTCAGTTAA ACAAAGGAAA AAAACACATA CAGCTAACTA AAATATaata
 agtattatct tacaatgctg gtgggaatat aaaatagtac agtcactttc gaaagtggag
 tcttttaaac atatggtcac tatacaacta agcaaacaca ctgctacacg tttactcagg
 agaaatgaaa ataatgtcca cacagaaact tgcacacaga tgtttacaat agcaaaaaat
 caaaaacaac tcaaatgtcc atcaactaac tactgaaaag acacatgaac tgcggtatat
 ctatctctgt acaacagaat aacactcagc aataaaaata aaactactga tacatacaac
 cacatgaatc acaaaaactt tatgttacat gaaagaagcc agacacaaaa actacattct
 atgtaattcc atttatgtga cattctaaaa aggacaaaac tatagtaaca tagcacatta
 gtggttgcca ggggttgggg tatggaaagg gaattgactg caaaaggtat gaggaaactt
 tttagggaga tagaaatgtt ctacatggct gtgattacgg ttacacaaat atataccttt
 gccaaaaatc atcaagttgt atgcttgatt ggtaaatttt attgtatata agttacatat
 taacaaaTGA ATATGATATA AAAAGCATAT ATAATAAGAC AAATGCTAAA CA

  Submitted Frequency for ss13395358 back to top
There is no frequency submission for ss13395358.


  dbSNP summary of Genotypes for ss13395358 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI120120T=0.96666664
A=0.03333334T/T=0.93333334
A/T=0.06666667
Pr(chiSq=0.005,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss13395358 back to top
There is no individual genotype data for ss13395358.

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