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Submitted SNP(ss) Details: ss13395359           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004464.15_3012331
RefSNP(rs#)rs9326096
Submitted Batch IDCHR22_NA17119.2
Submitted DateOct 23, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR22_NA17119
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:22S17119-166e20.p1kposition:159quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13395359|allelePos=201|len=401|taxid=9606|alleles='G/C'|mol=Genomic
 TGTCTTTTTC TTTGTCTCTT ATAAAACATC TTTATGAGCA AGAATTCAGT AGAAGTCATC
 TGTGTAGTTT TCTAACAAAA TCAGTAACAA AATAAAAACC TAAGATTCAT CACAGTGAAA
 ACTAGTTAAG TAATAAACAA ATATACTGAA TAATTACCCA GTAGGAAAAG AACTATTGAG
 CTGCAAAAAT TCGCTCAACA
 S
 AGACCATAAT ATACTTAACA TGAAGAATGC AAAGGAATGC TTTTAAAATA TTGTTCAATG
 GTAAATGTGG AATGTAAAAA CTGTGCCAAA TGAAGTTTGG CAAATTAAAA TAAAACCAAA
 TTACTAGGTA TGTATTCCTA TTTCAGGGTG CAATTTTGCA CCAAATAAAA TAATCTCATA
 CAGTTTGAAT TCACCAAGAT

  Submitted Frequency for ss13395359 back to top
There is no frequency submission for ss13395359.


  dbSNP summary of Genotypes for ss13395359 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI118118G=0.85593218
C=0.14406779G/G=0.74576271
C/G=0.22033899
C/C=0.03389831
Pr(chiSq=0.670,df=1)
=0.439
Genotype
Freq.

  Submitted individual genotype for ss13395359 back to top
There is no individual genotype data for ss13395359.

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