NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss14866781           
Submitter
HandlePERLEGEN
Submitter SNP IDPS00006529
RefSNP(rs#)rs10482860
Submitted Batch ID11-NOV-2003
Submitted DateNov 13, 2003
Publication Cited11721056
First entry to dbSNPNov 13 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize20
PopulationNCBI|NIHPDR
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss14866781|allelePos=101|len=201|taxid=9606|alleles='G/A'|mol=Genomic
 AAGGAAGGAA ATCTCTCTTT AGCCTGAAAG TGTATATCTA GATGAGAATG ACCAAAAATG
 GATAAGCTCT GGTTGGTCAA TATAATGAGT AGTTACTGAT
 R
 TACTGATATT TTTAATAGCT TAGCCTAGAT GGTATTACTT TTGTAAGTTA TATGTAAGAA
 ATTATTTGGC TATTCACTAA ACTTATTTTC CAAAAAGTGC

  Submitted Frequency for ss14866781 back to top
There is no frequency submission for ss14866781.


  dbSNP summary of Genotypes for ss14866781 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2424G=0.87500000
A=0.12500000G/G=0.75000000
A/G=0.25000000
Pr(chiSq=0.057,df=1)
=1.000
Genotype
Freq.
PDpanel4242G=0.92857140
A=0.07142857G/G=0.90476191
A/G=0.04761905
A/A=0.04761905
Pr(chiSq=8.629,df=1)
=0.005
Genotype
Freq.

  Submitted individual genotype for ss14866781 back to top
There is no individual genotype data for ss14866781.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement