NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss14873591           
Submitter
HandlePERLEGEN
Submitter SNP IDPS00512452
RefSNP(rs#)rs10487106
Submitted Batch ID08-28-2003
Submitted DateNov 24, 2003
Publication Cited11721056
First entry to dbSNPNov 13 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWAFER_HYB
Ascertainment Samplesize25
PopulationNCBI|NIHPDR
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
position 89456977

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss14873591|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 CACAGCTTTC TAGGAAGAGA AGATGAGAAG AAAGATAAAA CAGAGATATA TTATTCATGT
 GATGGAAGAA GATACTGACA TAGTTTAGAA ATTCCCTGAC
 Y
 GGATCCAAGT TGAACTAAGG CCAGACTATA TCCCAGATAT TCAACCAAGT TTAAACCAGC
 TTGTAATAGT ACTTCAAAAC TAAGTTTAAC TGTCAGTAAC

  Submitted Frequency for ss14873591 back to top
There is no frequency submission for ss14873591.


  dbSNP summary of Genotypes for ss14873591 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2424C=0.91666669
T=0.08333334C/C=0.83333331
C/T=0.16666667
Pr(chiSq=0.016,df=1)
=1.000
Genotype
Freq.
PDpanel4040C=0.75000000
T=0.25000000C/C=0.55000001
C/T=0.40000001
T/T=0.05000000
Pr(chiSq=0.089,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss14873591 back to top
There is no individual genotype data for ss14873591.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement