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Submitted SNP(ss) Details: ss161151672           
Submitter
HandlePERLEGEN
Submitter SNP IDIVD00719936
RefSNP(rs#)rs4292956
Submitted Batch IDPGI_05_08-SEP-2009
Submitted DateSep 11, 2009
Publication Cited[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNPSep 11 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFLX_FLAP3
Ascertainment Samplesize860
PopulationPGI_05_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss161151672|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 AGCTCTGAAG GGAGGGGAAG AGAGAGGCCT GGGTG
 TGACCTGACA CCTGCCGCTG CTTGAGTGGA CAGCAGCTGG ACTGGGTGGG CCCCACAGTG
 GTCAG
 Y
 GATTCCTGCC AAGTAGGGT
 TTAGCCGGGC CCCATGGTCA CAGACCCCTG GGGGAGGCTT CCAGCTCAGT CCCACAGCCC
 CTTGCTTCTA AGGGATCCAG A

  Submitted Frequency for ss161151672 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGI_05_PANEL
NORTH AMERICA
860C/C=0.86976701
C/T=0.12325600
T/T=0.00465100
N/N=0.00232600
PGI_05_08-SEP-2009PERLEGEN


  dbSNP summary of Genotypes for ss161151672 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGI_05_PANEL
NORTH AMERICA
858858C=0.93356645
T=0.06643356C/C=0.87179488
C/T=0.12354312
T/T=0.00466200
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss161151672 back to top
There is no individual genotype data for ss161151672.