Submitted SNP(ss) Details: ss161151686

Submitted SNP(ss) Details: ss161151686

Submitter
Handle	PERLEGEN
Submitter SNP ID	IVD00719926
RefSNP(rs#)	rs79996627
Submitted Batch ID	PGI_05_08-SEP-2009
Submitted Date	Sep 11, 2009
Publication Cited	[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNP	Sep 11 2009 12:00:00:000AM

Resource Links
GenBank Accession	NC_000008.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	FLX_FLAP3
Ascertainment Samplesize	860
Population	PGI_05_PANEL

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ACCCAGTGGG GCATGGTGTG GGTGCTGGGG GAGCGGTGGT G
 CACATTGAGC ACGAAGACGG TGATGACGAT GGACAGGGTG ACGAAGATCA TGGTGAACA
 K
 CAGGTACTCG CCGATGAGCG GGATGACCAG CGAGGTGGAC GGGATGATCT CAGTGATGAG
 CAGCAGGAAG ACGGTGAGTG ACAGCAGCAC CGAAATGCAC

Submitted Frequency for ss161151686

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PGI_05_PANEL - NORTH AMERICA	860				G/G=0.99534899 G/T=0.00232600 N/N=0.00232600 T/T=0.00000000		PGI_05_08-SEP-2009	PERLEGEN

dbSNP summary of Genotypes for ss161151686

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGI_05_PANEL - NORTH AMERICA	858	858	G=0.99883449	T=0.00116550	G/G=0.99766898 G/T=0.00233100 T/T=0.00000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss161151686

There is no individual genotype data for ss161151686.

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