NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss161151689           
Submitter
HandlePERLEGEN
Submitter SNP IDIVD00719921
RefSNP(rs#)rs56298562
Submitted Batch IDPGI_05_08-SEP-2009
Submitted DateSep 11, 2009
Publication Cited[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNPSep 11 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFLX_FLAP3
Ascertainment Samplesize860
PopulationPGI_05_PANEL
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss161151689|allelePos=101|len=201|taxid=9606|alleles='G/A'|mol=Genomic
 TAGTGCACAC CTTCCAGTGC CTTCTGCATG TGGGGTGATA GCAGCAGCTC ACCCTCCTGC
 AGCAGAGCCT CAGCCTTGGG ACCTGAGGCC CCAGAGTGCA
 R
 GTGGCCGTGG CTGCAGAGGG TGCCCACAGA GGGGGCCACA TGACCTGCAC ATGCCCATCT
 GTCCTCCTCC TCCACCACCA CCTCCCTCTC CTCGGCATCC

  Submitted Frequency for ss161151689 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGI_05_PANEL
NORTH AMERICA
860G/G=0.93720901
A/G=0.06279100
A/A=0.00000000
N/N=0.00000000
PGI_05_08-SEP-2009PERLEGEN


  dbSNP summary of Genotypes for ss161151689 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGI_05_PANEL
NORTH AMERICA
860860G=0.96860462
A=0.03139535G/G=0.93720931
A/G=0.06279070
A/A=0.00000000
Pr(chiSq=0.452,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss161151689 back to top
There is no individual genotype data for ss161151689.