Submitted SNP(ss) Details: ss161151698

Submitted SNP(ss) Details: ss161151698

Submitter
Handle	PERLEGEN
Submitter SNP ID	IVD00719837
RefSNP(rs#)	rs13277254
Submitted Batch ID	PGI_05_08-SEP-2009
Submitted Date	Sep 11, 2009
Publication Cited	[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNP	Sep 11 2009 12:00:00:000AM

Resource Links
GenBank Accession	NC_000008.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	FLX_FLAP3
Ascertainment Samplesize	860
Population	PGI_05_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTAAAAAATC TTT
 TGTCTTTCCT GCCTTAATAA CCTTTTTAAT GGTGTTGTTT TATATTCTAA AAAGTAAAAG
 TTATAAAAAG CTCAGTTGAA GGGTGTT
 R
 ACTCATACAT CAACTGGGTG ACCACAATGC TATC
 ATGCATGTTA GTGTGTGTGC TTGTGTGTGT GCACTGGAAG GAAGTAAAGC ATTGATGGTG
 ATTGGA

Submitted Frequency for ss161151698

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PGI_05_PANEL - NORTH AMERICA	860				A/A=0.58372098 A/G=0.36046499 G/G=0.05348800 N/N=0.00232600		PGI_05_08-SEP-2009	PERLEGEN

dbSNP summary of Genotypes for ss161151698

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGI_05_PANEL - NORTH AMERICA	858	858	A=0.76573426	G=0.23426573	A/A=0.58508158 A/G=0.36130536 G/G=0.05361305	Pr(chiSq=0.021,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss161151698

There is no individual genotype data for ss161151698.

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