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Submitted SNP(ss) Details: ss161151698           
Submitter
HandlePERLEGEN
Submitter SNP IDIVD00719837
RefSNP(rs#)rs13277254
Submitted Batch IDPGI_05_08-SEP-2009
Submitted DateSep 11, 2009
Publication Cited[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNPSep 11 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFLX_FLAP3
Ascertainment Samplesize860
PopulationPGI_05_PANEL
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss161151698|allelePos=101|len=201|taxid=9606|alleles='G/A'|mol=Genomic
 TTAAAAAATC TTT
 TGTCTTTCCT GCCTTAATAA CCTTTTTAAT GGTGTTGTTT TATATTCTAA AAAGTAAAAG
 TTATAAAAAG CTCAGTTGAA GGGTGTT
 R
 ACTCATACAT CAACTGGGTG ACCACAATGC TATC
 ATGCATGTTA GTGTGTGTGC TTGTGTGTGT GCACTGGAAG GAAGTAAAGC ATTGATGGTG
 ATTGGA

  Submitted Frequency for ss161151698 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PGI_05_PANEL
NORTH AMERICA
860A/A=0.58372098
A/G=0.36046499
G/G=0.05348800
N/N=0.00232600
PGI_05_08-SEP-2009PERLEGEN


  dbSNP summary of Genotypes for ss161151698 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PGI_05_PANEL
NORTH AMERICA
858858A=0.76573426
G=0.23426573A/A=0.58508158
A/G=0.36130536
G/G=0.05361305
Pr(chiSq=0.021,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss161151698 back to top
There is no individual genotype data for ss161151698.