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Submitted SNP(ss) Details: ss16384087           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_034410.5_213955
RefSNP(rs#)rs11576057
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA506s19600402826505.F 22 36HuAA505s19600402022513.R 592 47

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16384087|allelePos=499|len=699|taxid=9606|alleles='G/A'|mol=Genomic
 CTTTTGCAGC TCTATTTACA TATACCTATT GCTTTCTGTG ATTTTATGAC TAATTCTATA
 AACGTATATG TTAAAAAAAT TTGTTCTTCA GTCATCTTGA tttttttttt atttttattt
 tttgagacgg agtctagttc tgtcacccag gctggagtgc agtggtatgg tcttggctta
 ctgtaacctc cgcctcccag gttcaagcca ttctcctgcc tcagcctccc aagtagctgg
 gatttctggc gcctgccacc acacccagct aactgtattt ttagtacaga cagggtttca
 cgtgttggcc aggcttgtct tgaactcctg accttgtgat ctgcccgcct cggcctccca
 aagtgctggg attacaggcg tgagccccca cgcccggTGA TATTATGTTT TAAATGATGA
 GTTTTGAGCA AAGCTGTGAT AATTTTATCT TACCTATAGC AGTTTGCACA ACAGTAGCGT
 TTTATTTCAG ATATTACC
 R
 TTGCATAAAG TATGCAGTGG AGCACAGTTA TATTGTATAT ATGTTAATTA TATTTAAATT
 CTATTTACTT TCTGATTTTC CATCAAAAGC TAGAGTTACA CAAGGCGAGA TGTCAGTTTT
 GAAGATGAAC TGTAAAATAC ATTTTTAAAG AGGACCTAAC ACTCCTACTT GTCTTTTTCA
 ACTCTTTTTT TCAGCTTGTG

  Submitted Frequency for ss16384087 back to top
There is no frequency submission for ss16384087.


  dbSNP summary of Genotypes for ss16384087 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU114114G=0.79824561
A=0.20175439G/G=0.61403507
A/G=0.36842105
A/A=0.01754386
Pr(chiSq=1.179,df=1)
=0.294
Genotype
Freq.
HapMap-HCB
EAST ASIA
7878G=0.89743590
A=0.10256410G/G=0.79487181
A/G=0.20512821
Pr(chiSq=0.099,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8282G=0.69512194
A=0.30487806A/G=0.46341464
G/G=0.46341464
A/A=0.07317073
Pr(chiSq=0.357,df=1)
=0.584
Genotype
Freq.
HapMap-YRI118118G=0.93220341
A=0.06779661G/G=0.88135594
A/G=0.10169491
A/A=0.01694915
Pr(chiSq=2.254,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss16384087 back to top
There is no individual genotype data for ss16384087.

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