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Submitted SNP(ss) Details: ss16384104           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_019273.16_2826901
RefSNP(rs#)rs4839112
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA505s19600402157677.R -300 59

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16384104|allelePos=201|len=701|taxid=9606|alleles='T/C'|mol=Genomic
 AAACTTCTTA ACATTATTTC AAATCATCTC TGCCTTACCT TTTAATTCCA GTTGAAGCTA
 CAGCCACCAA TTCTGCATAA GCCTTAATGG TCTTCATGGC GTTATGGAAT CTTACCTCAG
 ATCTGTGTTG TGTACTTCTT GCTACCCTTC CTAGGGCTTC TGAGATACAG GTTTCCACTC
 AAGCAGGTAC AATCTAGACA
 Y
 GCAGAGGGGT TACTGTCACT TACAAACATC AGGGAAACGT AATGTTTCCA CCTTTCCTCC
 CCTGATGTTC TAGAAGCACA TTTTGTAAGA CTTTTAACAC CGTTCCAAAG GGATAGAGCA
 TTTAGTTGTT TCTACCAGTG GCTAATATGA TAAAAGCATG ATTTTATTGG CCCTCCCTTC
 TTCCCTGTTT CACTCCCCTG TCTCTTACTT ATTCTTTGCA TTCCACTCCC AAATTACTCT
 CACATGAGCT ACTTCCAGGT GAACTTAGcc ttagatagta ggcattgctc cactgtgtcc
 tggcattgaa tattgttgta gggatgtttg aagacagtgg ataatcacta ccctttcttt
 aatccacact tttaaagtta tttgattttt ttcctgtgag tgcctgaaga attcatgatt
 tattcttgaa gttcaataac ttaacaaggt tataccttga ttatgatggt ttttgtcaat
 ttctcctATA AAACAGTTGA

  Submitted Frequency for ss16384104 back to top
There is no frequency submission for ss16384104.


  dbSNP summary of Genotypes for ss16384104 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120T=0.57499999
C=0.42500001C/T=0.38333333
T/T=0.38333333
C/C=0.23333333
Pr(chiSq=2.791,df=1)
=0.100
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888C=0.64772725
T=0.35227272C/T=0.47727272
C/C=0.40909091
T/T=0.11363637
Pr(chiSq=0.092,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090C=0.65555555
T=0.34444445C/T=0.46666667
C/C=0.42222223
T/T=0.11111111
Pr(chiSq=0.050,df=1)
=1.000
Genotype
Freq.
HapMap-YRI118118T=0.72033900
C=0.27966103C/T=0.49152541
T/T=0.47457626
C/C=0.03389831
Pr(chiSq=2.855,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss16384104 back to top
There is no individual genotype data for ss16384104.

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