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Submitted SNP(ss) Details: ss16384113           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_004668.16_1389140
RefSNP(rs#)rs11576066
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA505s19600402613492.R 87 68

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16384113|allelePos=501|len=1001|taxid=9606|alleles='C/A'|mol=Genomic
 Agttgttttt tgtttactaa cttttcacaa cgaattctgt aaagtctgta ttcttcactg
 tgtggccact gaatctctgc ttggtttagt ggtcacctga tgactaggca ggaattttct
 taaacaggca aaaccagtct tccagtttct atgaaagggc tctgtttgca tgttggatca
 tgctttcaac actcaggtag atagctggca actcagctta gccttcatgt cctgcttgct
 cagagcgaaa gtgagagctt aaggccttat caagtctttc atgaacatgc ccacaaccct
 gggtatgtgc gtggtcctac acacacatgt gcccttctat attcccaaga acatgtcatc
 agagactttc aaagcttcca tggacatctt acttcccaac ttttcctttg gagattctca
 gttagtctat tgtttgctcc aattattatc cactgcccta gggagctgca agttaaataa
 ttacctataa ttgtttctaa
 M
 caaggagccc agggaaaagg ctttttatac aggacagctc tgagtgatgc caaatacaga
 cagctttaca agtggggtcc tccagggaac cactggataa gttaaataat gacaattctc
 tgggaatgag acgttggggt cactccagct ctatgctgct tcctccagtg ggttccaggc
 tgccagtttt cactgtaaat gcaggctgct agttttcacg gctactgtga agctggagat
 aggggaatga gactaaggaa agttaaaaat gtcaaaaagc ttattgttct tactgagatt
 ttgttgcttt tctgaaataa atgcttcctg gattgctgca agcctttggt tagtttccaa
 agttctgaaa aaggtgattc tgacaatttt gcaagttttt acattgctgt tttggagaag
 agaatttgtg aaggtgctta tgttaccatt ttctctgatg gccctctcct gtttttagtt
 ttCAAAATAG TGTCCTTATA

  Submitted Frequency for ss16384113 back to top
There is no frequency submission for ss16384113.


  dbSNP summary of Genotypes for ss16384113 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.94690263
A=0.05309734C/C=0.89380533
A/C=0.10619469
Pr(chiSq=0.037,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.88372093
A=0.11627907C/C=0.76744187
A/C=0.23255815
Pr(chiSq=0.163,df=1)
=0.752
Genotype
Freq.
HapMap-JPT172172C=0.96511626
A=0.03488372C/C=0.93023258
A/C=0.06976745
Pr(chiSq=0.008,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226C=0.96460176
A=0.03539823C/C=0.93805307
A/C=0.05309734
A/A=0.00884956
Pr(chiSq=5.593,df=1)
=0.020
Genotype
Freq.
HAPMAP-ASW9898C=0.87755102
A=0.12244898C/C=0.77551019
A/C=0.20408164
A/A=0.02040816
Pr(chiSq=0.124,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHB8282C=0.93902439
A=0.06097561C/C=0.87804878
A/C=0.12195122
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170C=0.94117647
A=0.05882353C/C=0.88235295
A/C=0.11764706
Pr(chiSq=0.038,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176C=0.99431819
A=0.00568182C/C=0.98863637
A/C=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.87777776
A=0.12222222C/C=0.76666665
A/C=0.22222222
A/A=0.01111111
Pr(chiSq=0.115,df=1)
=0.752
Genotype
Freq.
HAPMAP-MEX100100C=0.95999998
A=0.04000000C/C=0.92000002
A/C=0.08000000
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK284284C=0.89084506
A=0.10915493C/C=0.78873241
A/C=0.20422535
A/A=0.00704225
Pr(chiSq=0.357,df=1)
=0.584
Genotype
Freq.
HAPMAP-TSI176176C=0.98295456
A=0.01704546C/C=0.96590906
A/C=0.03409091
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16384113 back to top
There is no individual genotype data for ss16384113.

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