NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss165980881           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_556436
RefSNP(rs#)rs1856866
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165980881|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 GTTTGAAGCT GCTTCTTCGA ATTTGCAATT CAATATGAAA ATCACCTCAG AGCTGGTAAA
 AAGAGGCTTA ACCCCTGTCT TTAGATTTAC AGTCCAATGC TTCACTCAGC CATTTTACCT
 CACCCCCACT GATGTTCGCC GACCGTTGAC TATTCTCTAC AAACCACAAA GACATTGGAA
 CACTATACCT ATTATTCGGC GCATGAGCTG GAGTCCTAGG CACAGCTCTA AGCCTCCTTA
 TTCGAGCCGA
 R
 CTGGGCCAGC CAGGCAACCT TCTAGGTAAC GACCACATCT ACAACGTTAT CGTCACAGCC
 CATGCATTTG TAATAATCTT CTTCATAGTA ATACCCATCA TAATCGGAGG CTTTGGCAAC
 TGACTAGTTC CCCTAATAAT CGGTGCCCCC GATATGGCGT TTCCCCGCAT AAACAACATA
 AGCTTCTGAC TCTTACCCCC CTCTCTCCTA CTCCTGCTTG CATCTGCTAT AGTGGAGGCC
 GGCGCAGGAA

  Submitted Frequency for ss165980881 back to top
There is no frequency submission for ss165980881.


  dbSNP summary of Genotypes for ss165980881 back to top
No sufficient data to compute Hardy-weinberg probability for ss165980881.


  Submitted individual genotype for ss165980881 back to top
There is no individual genotype data for ss165980881.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement