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Submitted SNP(ss) Details: ss165980893           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_556823
RefSNP(rs#)rs2185540
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165980893|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 TAATCGGTGC CCCCGATATG GCGTTTCCCC GCATAAACAA CATAAGCTTC TGACTCTTAC
 CCCCCTCTCT CCTACTCCTG CTTGCATCTG CTATAGTGGA GGCCGGCGCA GGAACAGGTT
 GAACAGTCTA CCCTCCCTTG GCAGGGAACT ACTCCCACCC TGGAGCCTCC GTAGACCTAA
 CCATCTTCTC CTTACACCTA GCAGGTATCT CCTCTATCTT AGGAGCCATC AATTTCATCA
 CAACAATTAT
 Y
 AATATAAAAC CCCCTGCCAT AACCCAATAC CAAACGCCCC TTTTCGTCTG ATCCGTCCTA
 ATCACAGCAG TCTTACTTCT CCTATCTCTC CCAGTCCTAG CCGCTGGCAT CACTATACTA
 CTAACAGACC GTAACCTCAA CACCACCTTC TTCGACCCAG CCGGAGGAGG AGACCCCATT
 CTATACCAAC ACCTATTCTG ATTTTTCGGT CACCCTGAAG TTTATATTCT CATCCTACCA
 GGCTTCGGAA

  Submitted Frequency for ss165980893 back to top
There is no frequency submission for ss165980893.


  dbSNP summary of Genotypes for ss165980893 back to top
No sufficient data to compute Hardy-weinberg probability for ss165980893.


  Submitted individual genotype for ss165980893 back to top
There is no individual genotype data for ss165980893.

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