Submitted SNP(ss) Details: ss18057479

Submitted SNP(ss) Details: ss18057479

Submitter
Handle	SC_SNP
Submitter SNP ID	SC-CHR13_NA17119-200402.chr1.NT_079484.1_6914848
RefSNP(rs#)	rs12016623
Submitted Batch ID	SC-CHR13_NA17119-200402
Submitted Date	Feb 20, 2004
Publication Cited	[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Feb 20 2004 12:00:00:000AM

Resource Links
GenBank Accession	NT_079484
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	CHR13_NA17119
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Comment
sequence position qualityS13_3-37a15.q1k 690 56

Fasta sequence (Legend)

 TTCTTCAAGA ACATGATTTT GACTAATCTA ACACGATAAA CCTACCAGAT ATTCAGGGGA
 TACTAAAAGT TAACATGTAA TCTGTCTGTG GAGACCTTTT ATTTTAACAG TGCTTTTTTG
 AGTACCATGT CTTAACCCAA AGGACTCTGA GTGAATTTTA GACACTACAG GCCCTCAAGT
 GGATAAAAAT TACAGAATTT
 S
 CGTGGCCTTT AATGTTTTCT GGTCTGATTG CCAATTTAAT GCTTGAATCT CCTGCTAAGT
 GATTATTCTA AAGCCATTAA TGGCATCTCT GAATATCACT GATTGCTAGA GAGGTATTTT
 TCTGATATTG ACTCATAAGA AATCTCATTA TAGTTTCCAT AATTTTATGT TGATAACATT
 TTCATTCTTT TTAATCTTGG

Submitted Frequency for ss18057479

There is no frequency submission for ss18057479.

dbSNP summary of Genotypes for ss18057479

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	C=0.96460176	G=0.03539823	C/C=0.93805307 C/G=0.05309734 G/G=0.00884956	Pr(chiSq=5.593,df=1) =0.020	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	C=0.93023258	G=0.06976745	C/C=0.86046511 C/G=0.13953489	Pr(chiSq=0.033,df=1) =1.000	Genotype Freq.
HapMap-JPT	172	172	C=0.95348835	G=0.04651163	C/C=0.90697676 C/G=0.09302326	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	C=0.96017700	G=0.03982301	C/C=0.92035401 C/G=0.07964602	Pr(chiSq=0.015,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	C=0.93877554	G=0.06122449	C/C=0.87755102 C/G=0.12244898	Pr(chiSq=0.025,df=1) =1.000	Genotype Freq.
HAPMAP-CHB	82	82	C=0.93902439	G=0.06097561	C/C=0.87804878 C/G=0.12195122	Pr(chiSq=0.020,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	170	170	C=0.95294118	G=0.04705882	C/C=0.90588236 C/G=0.09411765	Pr(chiSq=0.019,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	180	180	C=0.98888886	G=0.01111111	C/C=0.97777778 C/G=0.02222222	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	C=0.92000002	G=0.08000000	C/C=0.83999997 C/G=0.16000000	Pr(chiSq=0.058,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	C=0.99300700	G=0.00699301	C/C=0.98601401 C/G=0.01398601	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	C=0.96022725	G=0.03977273	C/C=0.92045456 C/G=0.07954545	Pr(chiSq=0.012,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss18057479

There is no individual genotype data for ss18057479.

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