Submitted SNP(ss) Details: ss18062626

Submitted SNP(ss) Details: ss18062626

Submitter
Handle	SC_SNP
Submitter SNP ID	SC-CHR13_NA07340-200402.chr1.NT_021877.16_10318793
RefSNP(rs#)	rs10863268
Submitted Batch ID	SC-CHR13_NA07340-200402
Submitted Date	Feb 20, 2004
Publication Cited	[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Feb 20 2004 12:00:00:000AM

Resource Links
GenBank Accession	NT_021877
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	CHR13_NA07340
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
sequence position quality13S07_2-53g01.p1k -167 32

Fasta sequence (Legend)

 GTGTTCAAAG AAGAGTtatg tgtatgtaca tgtgtgtaca gatatatatg tgtatgtgtg
 tgtgtgtgta tatatatata tatatatTCA ATTTCTCTAA TTAATTAAAT TGTTATTTTC
 TTATTTCAGA CCTTTTCCTG GATATGGCCA AGTCTGAAGT TTCAAAATAC ATGTTATTCT
 GAACCTAATA AAGAAAACAT ATATCCAACC TTTAATCTAA TATATACTAG AATTAGTTTA
 ATTTAAAAAG AGAAACATAC TTTTAAATG
 Y
 CCCCCTTCTT TTTGCCAAAC AAAATATTCA CAAAGTGACT CAAATGCCAT GATTCAATGC
 AATGATCCAT TTTCTGAATT CATACAGACC CCTTTATTAA CTATGATTTT TTTGCCAGCT
 TTTTTTTCCT ATGTAGGTAG TGCTGATTTA AAAAAAAAAA TTGGAGGGAG TATGTATACT
 CTCTAATGAA ATTACTGATT

Submitted Frequency for ss18062626

There is no frequency submission for ss18062626.

dbSNP summary of Genotypes for ss18062626

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	118	118	C=0.76271188	T=0.23728813	C/C=0.54237288 C/T=0.44067797 T/T=0.01694915	Pr(chiSq=2.790,df=1) =0.100	Genotype Freq.
HapMap-HCB - EAST ASIA	84	84	C=0.84523809	T=0.15476191	C/C=0.69047618 C/T=0.30952382	Pr(chiSq=0.402,df=1) =0.527	Genotype Freq.
HapMap-JPT	84	84	C=0.92857140	T=0.07142857	C/C=0.88095236 C/T=0.09523810 T/T=0.02380952	Pr(chiSq=3.341,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss18062626

There is no individual genotype data for ss18062626.

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