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Submitted SNP(ss) Details: ss18069703           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_026943.13_2988932
RefSNP(rs#)rs12021502
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-510c06.q1k -659 40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069703|allelePos=201|len=701|taxid=9606|alleles='C/A'|mol=Genomic
 TAAGAGTATT TGGAATTAAT CTAATTGTAG TAGTGTGTAA GTAGTGTGTA AGTAGTGTGT
 AGTAGTGTGT AAGTAATTGC CCATCTCATG ATGGGCAATT CAATCCATGG AACACACTAC
 CTGTGGACAA AGACAACCAA GTTCAGATTA TATAATTCCT CTAACCAAAT TAATCAAAAC
 CCTGTAATTA TTCACAGATA
 M
 ccttataaaa atagcccaga agtacctcca tgatctcacc ccataatctg acctcatctt
 ctttcttcct catttttcac tggtgatcat actggccact ttgttattgc cagaaccaaa
 caaatacacc tctgcctcac aagccttttg cactaaccct tctttttgca ggtgtctgaa
 tgactatctc ccttacctcc tttaagtctt tgcttaaatg tcatcttctc aatgaggcct
 atcttgacca ccctgtttaa aaCTCCAACC TGggccaggc gcagtggctc acgcctgtaa
 tcccagcact ttggaaggcc aaggcagatc acctgaggtc aggagttcga gaccagtctg
 gccaacatgg tgaaacctca tctctactaa taatacaaaa attagctagg catggtggtg
 ggtgcctgta atcccagcta cttgggaggc tgaggcagga gaatcacttg aacccgggac
 gagaaggttg cagtgggccg

  Submitted Frequency for ss18069703 back to top
There is no frequency submission for ss18069703.


  dbSNP summary of Genotypes for ss18069703 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.94690263
A=0.05309734C/C=0.89380533
A/C=0.10619469
Pr(chiSq=0.037,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.83720928
A=0.16279070C/C=0.69767439
A/C=0.27906978
A/A=0.02325581
Pr(chiSq=0.024,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172C=0.81976742
A=0.18023255C/C=0.68604654
A/C=0.26744187
A/A=0.04651163
Pr(chiSq=0.775,df=1)
=0.403
Genotype
Freq.
HAPMAP-ASW9898C=0.98979592
A=0.01020408C/C=0.97959185
A/C=0.02040816
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282C=0.89024389
A=0.10975610C/C=0.78048778
A/C=0.21951219
Pr(chiSq=0.129,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHD170170C=0.90588236
A=0.09411765C/C=0.82352942
A/C=0.16470589
A/A=0.01176471
Pr(chiSq=0.099,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176C=0.94886363
A=0.05113636C/C=0.89772725
A/C=0.10227273
Pr(chiSq=0.025,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX9898C=0.93877554
A=0.06122449C/C=0.87755102
A/C=0.12244898
Pr(chiSq=0.025,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176C=0.92613637
A=0.07386363C/C=0.86363637
A/C=0.12500000
A/A=0.01136364
Pr(chiSq=0.656,df=1)
=0.439
Genotype
Freq.

  Submitted individual genotype for ss18069703 back to top
There is no individual genotype data for ss18069703.