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Submitted SNP(ss) Details: ss18069705           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_028050.13_4818411
RefSNP(rs#)rs11165555
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-865d17.q1ka -376 56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069705|allelePos=501|len=1001|taxid=9606|alleles='G/T'|mol=Genomic
 agggaagtat acccagccag tcaaagcctt gataaaacaa ccagtttctt caattgaatc
 atgttgcaaa ataaaatgga ttcttattgc actgatgcaa acaactatat tgccatcagt
 taaggatact cacaactagt ttccaaattc tggggaagcc aagcagagaa agagagaggg
 atgaatatgc tcaaaatttt gttcacagaa gtatatctca attaataaag gccataagta
 gcttaaaata agtttcactg actctgaaaa acaaaacaaa gatcagcaat gttctaagca
 aaagtcaaaa taattacttg ttttctatta gttcaatcca ttcatttaac tcttcttttg
 cttgatattc ataaacattt ctgcttttca tgagtcctgt atgtttttcc tttataccaa
 tgtcacaatc tccaaagcta tcagaaacct gcatttgaga acgtctatca aaattctata
 gctgattata tatcatcttt
 K
 gaagaggatc aaaacaagac aacaattttc tgtgaataac aaaatgtcta gggcagttac
 agtcagaaac acaactgata aagaaatttg ctatctctgt ggtttacaat aacttaaaat
 aacaacctta attgtgattg atagcatata ctcagacatt agaattttag aaaccccata
 caattttgca acatatattc atattattcc ctaaaatata acctgaagaa gattaaacat
 cattttggca gtcctatgta cctaaacatg tcaaataatc ctgtttaatc tctcttctgg
 gtgctccaga ggtcctctgt agcttccaaa agctaggcat cagcaaagac aatttttgaa
 actgaagttt gctttgggga agcctgttaa atatgttaga tgtttaaaac acttgatgtt
 atgaaataca attccagatt tccgtaagtt atttgttttg ccaaaatgat gactcaaaaa
 tttttaaaaa aagcaaaaac

  Submitted Frequency for ss18069705 back to top
There is no frequency submission for ss18069705.


  dbSNP summary of Genotypes for ss18069705 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU110110G=0.62727273
T=0.37272727G/T=0.56363636
G/G=0.34545454
T/T=0.09090909
Pr(chiSq=2.320,df=1)
=0.150
Genotype
Freq.
HapMap-HCB
EAST ASIA
7878T=0.70512819
G=0.29487181T/T=0.51282054
G/T=0.38461539
G/G=0.10256410
Pr(chiSq=0.220,df=1)
=0.655
Genotype
Freq.
HapMap-JPT7878T=0.61538464
G=0.38461539G/T=0.46153846
T/T=0.38461539
G/G=0.15384616
Pr(chiSq=0.024,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18069705 back to top
There is no individual genotype data for ss18069705.