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Submitted SNP(ss) Details: ss18069706           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_004836.15_1932044
RefSNP(rs#)rs10925290
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-959k09.p1k 53 29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069706|allelePos=501|len=767|taxid=9606|alleles='C/A'|mol=Genomic
 GAGTTTGGGG AATGTTACTC TAAAATATAG CTCCCTGGTA TGAGTGTTTT GAAGTAAAGG
 CCCTTAAAGA CCCACAGACA CTGGAAATGA CTTttcccct atgtacataa agagggacct
 accaagaggg aaaatggttt tttccttctc ctctgtgtta gttcattacc tgttcagaaa
 agaagagcaa gaatctaaac acacctgaac acacccactt acaagatagt atctgtctct
 taggctcagt cagtttccaa agacaaccat tgacaagtta atctctgctc cccatccact
 catatccact cattctcctt agtaatcatt gattgcccct caacggaatg atctacattc
 cctatccctc cctcccctct ggaataagag catataacat ctgggcctcc ctaggatagg
 gggtcatctc tcattgagat gggggttctc cctcccgtgc atgtgaatca attttcatgg
 cttttctcca attaatctgc
 M
 gtttgtcagt taagttttca gtgaaacttc agagggcaaa ggggaagttt tcccttggcc
 cctgcaAGGG AAAGAAATGA GCCTTCTCTT CTCCCATACT CCTTACTTAC TCAGAACTGT
 GCTCTAGCAA ATGCTCAGCA CTATTTTTGT TAAAAGACTT GTCCAGAGCT GGGGCCTAGG
 ACCTAAGTCT CCAATTCTCA TTCTCCATCA TTCTAGAAGT TAGAATACTT ATGTCCTAAT
 TCTCTAATAG CTTCTATGTT TAGCCA

  Submitted Frequency for ss18069706 back to top
There is no frequency submission for ss18069706.


  dbSNP summary of Genotypes for ss18069706 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.96017700
A=0.03982301C/C=0.92035401
A/C=0.07964602
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.66279072
A=0.33720931A/C=0.48837209
C/C=0.41860464
A/A=0.09302326
Pr(chiSq=0.368,df=1)
=0.584
Genotype
Freq.
HapMap-JPT172172C=0.56395346
A=0.43604651A/C=0.59302324
C/C=0.26744187
A/A=0.13953489
Pr(chiSq=3.641,df=1)
=0.100
Genotype
Freq.
HapMap-YRI222222C=0.69819820
A=0.30180180A/C=0.47747749
C/C=0.45945945
A/A=0.06306306
Pr(chiSq=1.963,df=1)
=0.200
Genotype
Freq.
HAPMAP-ASW9898C=0.73469388
A=0.26530612C/C=0.53061223
A/C=0.40816328
A/A=0.06122449
Pr(chiSq=0.108,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHB8282C=0.69512194
A=0.30487806C/C=0.51219511
A/C=0.36585367
A/A=0.12195122
Pr(chiSq=0.768,df=1)
=0.403
Genotype
Freq.
HAPMAP-CHD168168C=0.66071427
A=0.33928570C/C=0.46428570
A/C=0.39285713
A/A=0.14285715
Pr(chiSq=1.286,df=1)
=0.273
Genotype
Freq.
HAPMAP-GIH176176C=0.83522725
A=0.16477273C/C=0.70454544
A/C=0.26136363
A/A=0.03409091
Pr(chiSq=0.224,df=1)
=0.655
Genotype
Freq.
HAPMAP-LWK178178C=0.67415732
A=0.32584271A/C=0.47191012
C/C=0.43820226
A/A=0.08988764
Pr(chiSq=0.489,df=1)
=0.527
Genotype
Freq.
HAPMAP-MEX9898C=0.86734694
A=0.13265306C/C=0.73469388
A/C=0.26530612
Pr(chiSq=0.284,df=1)
=0.655
Genotype
Freq.
HAPMAP-TSI172172C=0.97674417
A=0.02325581C/C=0.95348835
A/C=0.04651163
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18069706 back to top
There is no individual genotype data for ss18069706.