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Submitted SNP(ss) Details: ss18069708           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_004511.16_1252586
RefSNP(rs#)rs10753238
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-19e11.q1k 152 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069708|allelePos=201|len=657|taxid=9606|alleles='G/A'|mol=Genomic
 CAACTGGGAA CCTTAAGAGC TTGCAGGTTG AGAGCTGACA GAGTGGACAG CTGGCTTAGC
 AGGCTGGCCC TGGGCCAGGC CAGGGTTGCA ACCTCACGTC CTGCAGCTTC CAGCGCCCTC
 TTGGACAGAG ACAGATGATT CCAGCTCTCC AAGTCCAATT CTGCCTCTCC TTGGGATATT
 CCCTAATGCC TGAGATCACC
 R
 CCATGTCCTA TTACCTCCTC CACTCTTTAC CCTCAAGATG TTCATTATCT GTCCTCTTGT
 TCCTCTCCTT TCCTCAAGCT CACTTGTGGA TCTGACTGCT GTACTGCCCA CGGCACCTGC
 TGCACCAAGC CTTCCCTCCC CACAGGCCCC ATGCATACGC TGTTTTCCCT GGCTTATTTA
 TTCCTCCCTG CCTTGTCCCT CATCTGTTAA GACTCACCCT AAGTGTCAAG TGTGCCAGGA
 AAACCTTCTG GGTTCCCACC TGGGTCAGGA CCACACACAG GACTCTGAAG CCCTGCATTT
 ACTGCACGTG TCACACTGTC TTTCTGGATC GGTCTCCCCA ACTAAACTGA GCATTCCTTG
 ACATAAGAGA TCATATCTCA TGGATCTCTG CAGCATATAA AATGGTGCCC CATTCATTCT
 TTCGTTCACT GAATGTGTAT TCTGATGCAT CCCAGT

  Submitted Frequency for ss18069708 back to top
There is no frequency submission for ss18069708.


  dbSNP summary of Genotypes for ss18069708 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.55833334
G=0.44166666A/G=0.44999999
A/A=0.33333334
G/G=0.21666667
Pr(chiSq=0.460,df=1)
=0.527
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.78888887
G=0.21111111A/A=0.62222224
A/G=0.33333334
G/G=0.04444445
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090A=0.89999998
G=0.10000000A/A=0.82222223
A/G=0.15555556
G/G=0.02222222
Pr(chiSq=0.830,df=1)
=0.371
Genotype
Freq.
HapMap-YRI120120A=0.75833333
G=0.24166666A/A=0.56666666
A/G=0.38333333
G/G=0.05000000
Pr(chiSq=0.126,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss18069708 back to top
There is no individual genotype data for ss18069708.