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Submitted SNP(ss) Details: ss18069711           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_004487.16_17373646
RefSNP(rs#)rs12021506
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-464l22.q1k -321 51S1A_2-987h10.q1k -424 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069711|allelePos=501|len=1001|taxid=9606|alleles='G/T'|mol=Genomic
 ccatgatgcc caggctgtct ccactgagag gcatctgcag ccctgagcca ggccacctca
 atgccctggg gcctcctcct gtgctcatgt ggcacccaaa gtctgaaggg ggctgaggtt
 gcaggggact gttgtggcag cgctgccttg agcacatgca cacctggctg agttgtggca
 gcacctaggc ttcgccacaa ctttgctcta ccccagagtg ggcactagga gcagagagag
 gtcaggagca ggagcaaaca ttttcaagcc tgtgggggca gagtttttcc tgggtccccc
 aagaacacag ggatgctggt gtctggagcc gtggctgtgt ggctgaggct atacctagga
 gtgcaggctc ctgccctgcc aacccagtaa ggggtggggc tcttacctgt acttggctcc
 caccagctct gtggagcgct cagccccagc tgtgccttcc gtgctgcagc cAGCATCCTC
 ACAAAGGCAT CTCCAGAAGG
 K
 CCATCACTGC CATCAATAGG ATCAAATtta tatgaaattt agaaaaagta caactattga
 gttggaaaat agatcagttg ttgtcgggag ttgggagagg ggatagtgat tgactacagt
 gggcaatgtg ggggaaactt tagcatgaaa taaccgttct ataaggtact ggaatggtgg
 atacatagct ctatgtcttt atcataactc ttagaacagc atatcacaaa gaatatacct
 tattttatgc aagctaaaaa aaatcagcca gaatgtctag ggatccctgg atgaaataca
 gactgtgcca gataaatgta actatgtttc aaatgtatga aaaacaacct tactgaatga
 agtagtaggg aggagaggtg gagagggaag gaaagaagct gatcaaagta acttggtaaa
 cacagagttt cgatggggat ttcaaggcta aaggccaaaA ATATAATGTG TATATACTAC
 CAGCTGGTGG GCTCTTGTAT

  Submitted Frequency for ss18069711 back to top
There is no frequency submission for ss18069711.


  dbSNP summary of Genotypes for ss18069711 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU104104G=0.59615386
T=0.40384614G/T=0.46153846
G/G=0.36538461
T/T=0.17307693
Pr(chiSq=0.089,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
7676G=0.51315790
T=0.48684210G/T=0.50000000
G/G=0.26315790
T/T=0.23684211
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT7474T=0.59459460
G=0.40540540G/T=0.43243244
T/T=0.37837839
G/G=0.18918920
Pr(chiSq=0.393,df=1)
=0.584
Genotype
Freq.
HapMap-YRI102102G=0.62745100
T=0.37254903G/T=0.43137255
G/G=0.41176471
T/T=0.15686275
Pr(chiSq=0.305,df=1)
=0.584
Genotype
Freq.

  Submitted individual genotype for ss18069711 back to top
There is no individual genotype data for ss18069711.