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Submitted SNP(ss) Details: ss18069714           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_032977.6_17274956
RefSNP(rs#)rs12021507
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-532i03.p1k 212 56S1A_2-661g20.p1k 506 42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069714|allelePos=486|len=986|taxid=9606|alleles='G/C'|mol=Genomic
 AGAAACCTAC TCATTGAAAT GAACATACCT CTCCACGTCA ATCAGTGGTG CTCAAGATTG
 CAGGAAAAAA GTTCTCCACC AGTCAACATT TGAAAATGTC tttttttttt tttttgagtt
 gaggcttcac tctgtcgctg aggctggagg gcagtggtgt aatcacagct tattgtagct
 ttgacctctt gggcctcagc ctcccgagta gctggaacta caggcacatc accatgactg
 actaattttt gttttaattt tttttagaga tagggatctc tgctatgttg actaggctgg
 tttctaactc ctgccctcaa gcaattctgc cacctcagac tcccaagtag ctaagatcat
 aggtgtgagc tgccaccccg gccTGAAAAT GTCTTTCAGT CAGAAATTTA CCCATATTTG
 TAAAAATACA GGAGCTGCAC CGCATAACCC ACAGAAAACT TTTGAGCTTT CTGAGTTTTT
 GAGAC
 S
 GACTTTGGGA ATCCACTTTT CTAAGTTAGA AAGAAAATGT AAGCGTGCCT GTTTGTTGCT
 TAAATGTATT CTCACATATT TATCATTGTT TCACTCATAC TGCCATTTAA CTTTTCAACT
 GTTTATCCCT TGGTCTCCTA ATGAAAAGGG GGACAAGGAG GGtgtgtcag tcagggtccc
 tgcaggaagc aggcactaca ttcagatgga gtttggaaaa gaattgaaca aaggctacct
 atttacagag gtgaagccag gttagagaaa cagctaaggc tgaggaggca cccaggagta
 gccacaggga gaagtctgct gcccattggc ctaaaggggc CTTGTGGGAG CTGGAGTCAT
 GAAGGAGGAG CTGCCTGGAT TGGCATCTCA GAGGGGTCTT AGAGGGAATA CATTACCAGA
 ACCCCTGTGC AGCAGCAGAG AGGGATCAGT GAAAAGATAT TGACCTCACA CTTCTCTAGC
 TCTTAATCTT CCACCAGTGC

  Submitted Frequency for ss18069714 back to top
There is no frequency submission for ss18069714.


  dbSNP summary of Genotypes for ss18069714 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.92500001
C=0.07500000G/G=0.85000002
C/G=0.15000001
Pr(chiSq=0.057,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.87777776
C=0.12222222G/G=0.77777779
C/G=0.20000000
C/C=0.02222222
Pr(chiSq=0.207,df=1)
=0.655
Genotype
Freq.
HapMap-JPT9090G=0.92222220
C=0.07777778G/G=0.84444445
C/G=0.15555556
Pr(chiSq=0.048,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120G=0.86666667
C=0.13333334G/G=0.78333336
C/G=0.16666667
C/C=0.05000000
Pr(chiSq=4.665,df=1)
=0.050
Genotype
Freq.

  Submitted individual genotype for ss18069714 back to top
There is no individual genotype data for ss18069714.