NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss18069715           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_004671.15_4398002
RefSNP(rs#)rs10801171
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-359j05.p1k 313 50

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069715|allelePos=501|len=1001|taxid=9606|alleles='C/G'|mol=Genomic
 TGGGTAAAAA tgaattcttt gtcattatct ttaaaaatcg acataaaaac ccatattctg
 gcttctcttg aaaGTAAGTT TTTTTTCTTT TGGCAGCACT AAGTCAATAC GTGTCTACAC
 CACTTGTCAG GGCACACTCT GTTCAGTCAC CACACCCTAA CAACTCTCTA TTACATCACT
 Gtgtttgttt gtttgtttgt ttgtttgaga cagagtctca ctctgttggc caggctggag
 cacagtggca cgatcttggc ccactgtaac ctctgcctcc tcagttcaag tgattctcct
 gcctcagcct cctgagtagc tggtattaca ggcatgtgcc accacgccca gctaattttt
 ttttattata ctttaagttc tagggtacat gtgcacaacg tgcaggtttg ttacatatgt
 atacatgtgc catgttggtg tgctgcaccc attaactcgt catttaacgt tacgtatatc
 tcctaatgct atccctcccc
 S
 ctccccccac cccacaacag gccctggtgt gtgatgttcc ccttcctgtg tccatgtgtt
 ctcattgttc aattcccacc tatgagtgag aacatgcagt gtttcgtttt ttgtccttgc
 gatagtttgc tgagaatgat ggtttccagc ttcatccatg tccctacaaa ggacatgaac
 tcatcctttt tatggctgca tagtattcca tggtgtatat gtgccacatt ttcttaatcc
 agtctatcat tgctggacat ttgggctggt tccaagtctt tgctattgtg aatagtgccg
 caataaacat acgtgtgcat gtgtctttat agcagcatga tttataatcc tttgggtata
 taccccgtaa tgggattgct tggtcaaatg gtatttctag ttctagatcc ctgaggaatc
 gccacactga cttccacaat ggttgaacta gtttacagtc ccaccaacag tgtaaaagtg
 ttcctgtttc tccacatcct

  Submitted Frequency for ss18069715 back to top
There is no frequency submission for ss18069715.


  dbSNP summary of Genotypes for ss18069715 back to top
No sufficient data to compute Hardy-weinberg probability for ss18069715.


  Submitted individual genotype for ss18069715 back to top
There is no individual genotype data for ss18069715.