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Submitted SNP(ss) Details: ss18069717           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_004487.16_12076927
RefSNP(rs#)rs10797828
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-579k10.p1k 721 45S1A_2-852i20.q1ka 562 42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069717|allelePos=201|len=654|taxid=9606|alleles='G/A'|mol=Genomic
 GTATTTTCTT AGACTCATCT GGTAGTGAAG TGGCCTCTAG CTCAGGTCTT CACAGGCAGA
 ACATCCATGC TTTGAGGAGG CTGTATTAGC AAAATAAGAA ACCTACTCAG AGATAAGGGA
 GAAGCTTCAT TGTTGATGCT GTTATTAACT CAGGCTCAGC TTCCTGGTTT GAGAGATGTT
 CTGAATACAT ATTGATGGAT
 R
 GGTTATTAAT ACATTACATC ATGGTGGAAC TTGGCATCCC AGACTGGATA AGCCCACTTG
 CCCTGTTATA TACCAGCATT TGTGGTTTGT ATTAATAACT ctgtaatccc agctacatgg
 aaggctgagg caggagaatt gcttgaaccc aggaggtgga ggttgcagta agccaagatc
 atgccattct actccagtat gggcaacagg agcaaaactc tggcccaata ataaaaaTAA
 CTAACCCAGA TTGTGTGACA GGAGATAAtg gaaatgatct gagtggccac ctaatttcag
 tgaaggaact agccaaggta agtgacttgc tcagtgtaag tccacaacta atttgtggcC
 ACTCAGGACA TTGAACTGGG TCTCGGAGCA AATTATAAGA TAGGTAAAAC AGAGGGGACA
 CAAACGTGGA ATAGTGAGAG GGTGAGGAGA GTG

  Submitted Frequency for ss18069717 back to top
There is no frequency submission for ss18069717.


  dbSNP summary of Genotypes for ss18069717 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU9898G=0.67346936
A=0.32653061G/G=0.46938777
A/G=0.40816328
A/A=0.12244898
Pr(chiSq=0.254,df=1)
=0.655
Genotype
Freq.
HapMap-YRI116116G=0.93965518
A=0.06034483G/G=0.87931037
A/G=0.12068965
Pr(chiSq=0.028,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18069717 back to top
There is no individual genotype data for ss18069717.