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Submitted SNP(ss) Details: ss18069722           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_079484.1_2347147
RefSNP(rs#)rs12021508
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-254m03.p1k 496 56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069722|allelePos=202|len=702|taxid=9606|alleles='G/C'|mol=Genomic
 CAGCTGGGGA ACAAATAAAC TTCTTGATTT TAAAAGTCAA CTGGCCCACA GAGTTCAGAT
 CAAATCTGTT CTTATGGATT CACTACCATT ATTTTCCAGT CTATTGAGAT AACCCAATAT
 TTAAGAACAG AATTCCTTTT TGCTGGTTGT CTAATAGGTT ATAAACAAAT GTGGTCTCGT
 CTATCCAAAT CAATGGGGCA a
 S
 ctgggtgctg tggctcatgt ctgtaatccc agcactttgg gaggctgagg tgggtggatg
 acatgaggcc aagagtttga gaccagcctg gccaacatgg caaaacccca tctctactga
 aattacaaaa attagccggg catggtggca cgcctgtagt cccagctact caggaggctg
 aggcacaaga atcacttgaa cccaggaggt ggaggttgca atgacccaag atcatgccat
 tgcacaccag ccggggcaac agaacaagac tctgtctcca aaaaaaaaaa aaaaaaaaaa
 aaaaaaaCca cacacacaca cacacacaca cacacacaca cacacacaca AAATTAATGG
 GGAAAGATTG ATCATGCATA TAGAGAAACC TCTTAAGGTC TACATCAACT GATAATTTAG
 ATTCTAAATG TGAAGAGGAC TTAAATTATA ATAAAGTGAT CAATAACCAT ATATAGTTAA
 TAAAAAGTAG CAGGTAAAAA

  Submitted Frequency for ss18069722 back to top
There is no frequency submission for ss18069722.


  dbSNP summary of Genotypes for ss18069722 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8484G=0.97619045
C=0.02380952G/G=0.95238096
C/G=0.04761905
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8484G=0.97619045
C=0.02380952G/G=0.95238096
C/G=0.04761905
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18069722 back to top
There is no individual genotype data for ss18069722.