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Submitted SNP(ss) Details: ss18069728           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_029860.11_4127968
RefSNP(rs#)rs12021511
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-63d13.q1k 334 42S1A_2-576p17.p1k 520 50

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069728|allelePos=501|len=1001|taxid=9606|alleles='G/A'|mol=Genomic
 aaatatcaac atttacagga gtttggaaaa agtttattcc agccctcatg gatacatttg
 aaggattcaa gccttctgtg aaggaggtca ttgcacatgt ggtggaaatg gtcagagaac
 tagaattagg agcagagcct gaagatgtga ctggattgtt gcaatctcat gataaaactt
 gaatggagga ataaaaagaa attgggtaat gggtacaaac atacagttag ataggacaaa
 taaattctaa ctttccatag caaggcaggt tgactatagt taacaacaat gtattgtata
 tttcaaaata gctagaagag agaacttgaa atgttaccaa cacatagtaa tgataaatac
 ttgaggtgat ggacacctca aatatcctga cttaattatt acacagtcta tgcatgtaag
 aaaatatcac atatatccca tacatacgta caaatatttg tatcaataaa aataacttga
 atggataagt tacttcttac
 R
 gatgaaaaaa agttgttctt gagatgaaat ctactcccag tgaagatact gtgaacattg
 ttgaagtgac accaaaggac ttagaatatt acataaactt catcgataaa acaaaagcag
 ggtttgagag gattgatttt aattttgaaa gaagttctac tgtatgtaaa gtgctatcaa
 atagtatcac acacaacaga gacatctgtc atgaaagata gagtgaatca attcagcaaa
 cttcattgtc atcttatgag atggtttggc tgtgtcccca cccaaatctc atcttgaatt
 atagttctca taatccccac atgtcatggg agggacccgg tgggaggtaa ttgaatcgtg
 gggtccgttt cccccatgct attctcgtga tagtaagttt tcatgagatc tgatggtttt
 ataaggggct tccccctttg ctcagccctc attcttctcc ttgctgccac tatatgaaga
 aggacatgtt tgcttcccct

  Submitted Frequency for ss18069728 back to top
There is no frequency submission for ss18069728.


  dbSNP summary of Genotypes for ss18069728 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU108108G=0.55555558
A=0.44444445A/G=0.55555558
G/G=0.27777779
A/A=0.16666667
Pr(chiSq=0.844,df=1)
=0.371
Genotype
Freq.
HapMap-HCB
EAST ASIA
8080A=0.56250000
G=0.43750000A/G=0.47499999
A/A=0.32499999
G/G=0.20000000
Pr(chiSq=0.049,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8080A=0.53750002
G=0.46250001A/G=0.57499999
A/A=0.25000000
G/G=0.17500000
Pr(chiSq=0.980,df=1)
=0.343
Genotype
Freq.
HapMap-YRI114114G=0.94736844
A=0.05263158G/G=0.89473683
A/G=0.10526316
Pr(chiSq=0.018,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18069728 back to top
There is no individual genotype data for ss18069728.