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Submitted SNP(ss) Details: ss18069729           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA11321-200402.chr1.NT_079484.1_3130600
RefSNP(rs#)rs12021512
Submitted Batch IDSC-CHR1_NA11321-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1A_2-78l03.p1k 366 56S1A_2-319o18.p1k 287 51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18069729|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GCTTGCGCAG AACTCCTCTC CAAGGCTCCT TGCGGCTCCC ATTTCCCTCC TCTCAAGTCT
 CCAAATGCAG CTCTTGTCTC CAGACAGTGG GACCCAGCAG TCTATCCCCC AGCCTGCTTC
 CTAGGGACCT GTGGAAACCA GCTCTCTTAG GAGTTCCAGG GAGGAGGCTG GGGTCCCAGA
 AGTTGAGAAA TAAGGACCAG
 Y
 TTCCCCATCC CCTGGGCCCT TCCTGCTGCA GACCAGACCC AGGACTGACG GCCGGGCAGG
 CCCTTTCCTT GGGGCCAGTG AGTCAGACTC CCGGGAGATA GTCAGAGGTG TTGGGGGATT
 TGAGCAGAAT AAAGGAGGGC CCCAGGAGCC CAGATTCCTG GTCCCCACCC CCACCCTCCC
 CTCTTGAACT GGCAGGGAAT

  Submitted Frequency for ss18069729 back to top
There is no frequency submission for ss18069729.


  dbSNP summary of Genotypes for ss18069729 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224C=0.96428573
T=0.03571429C/C=0.92857140
C/T=0.07142857
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.93333334
T=0.06666667C/C=0.86666667
C/T=0.13333334
Pr(chiSq=0.030,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8888C=0.88636363
T=0.11363637C/C=0.79545456
C/T=0.18181819
T/T=0.02272727
Pr(chiSq=0.418,df=1)
=0.527
Genotype
Freq.
HapMap-YRI220220C=0.99545455
T=0.00454545C/C=0.99090910
C/T=0.00909091
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9696C=0.98958331
T=0.01041667C/C=0.97916669
C/T=0.02083333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD164164C=0.94512194
T=0.05487805C/C=0.89024389
C/T=0.10975610
Pr(chiSq=0.030,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH172172C=0.92441863
T=0.07558139C/C=0.86046511
C/T=0.12790698
T/T=0.01162791
Pr(chiSq=0.616,df=1)
=0.439
Genotype
Freq.
HAPMAP-TSI170170C=0.94705880
T=0.05294118C/C=0.89411765
C/T=0.10588235
Pr(chiSq=0.027,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss18069729 back to top
There is no individual genotype data for ss18069729.